BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027426
         (291 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...    70   9e-14
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    65   4e-13
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    63   6e-12
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    63   2e-08
ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [S...    45   4e-08

>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score = 70.5 bits (171), Expect(3) = 9e-14
 Identities = 30/38 (78%), Positives = 34/38 (89%)
 Frame = -2

Query: 116 LKKHNFPPYPEPFDNYISKFGTVEDAREFLKVLSVKQY 3
           +KKHN+PP+PEPFD YISKFGTVEDA  F KVLSVK+Y
Sbjct: 386 MKKHNYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEY 423



 Score = 26.6 bits (57), Expect(3) = 9e-14
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 288 DADLLEVLVNGLCSNRRVE 232
           DADLL+VLV G  S R+++
Sbjct: 323 DADLLDVLVKGFLSQRKMD 341



 Score = 23.9 bits (50), Expect(3) = 9e-14
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 232 DSAYTLLIEMVDKAK 188
           D AYT L+EMV+K +
Sbjct: 341 DGAYTFLVEMVNKLR 355


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 65.5 bits (158), Expect(2) = 4e-13
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = -2

Query: 122 HFLKKHNFPPYPEPFDNYISKFGTVEDAREFLKVLSVKQY 3
           H +KK N+PP+PEPF  YISKFGTVEDA EFL  LS K+Y
Sbjct: 537 HLMKKQNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKY 576



 Score = 33.9 bits (76), Expect(2) = 4e-13
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 8/38 (21%)
 Frame = -1

Query: 291 ADADLLEVLVNGLCSNRR--------VEIVRTPCLLRW 202
           ADADLLEVL+NG  S +R        VE+V T  L+ W
Sbjct: 475 ADADLLEVLINGFLSQKRIDGAYKLLVEMVNTAHLVPW 512


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 63.2 bits (152), Expect(3) = 6e-12
 Identities = 26/38 (68%), Positives = 33/38 (86%)
 Frame = -2

Query: 116 LKKHNFPPYPEPFDNYISKFGTVEDAREFLKVLSVKQY 3
           +K+HN PP+PEPF  YIS+FGTV+DA +FLK LSVK+Y
Sbjct: 537 MKQHNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEY 574



 Score = 25.8 bits (55), Expect(3) = 6e-12
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 288 DADLLEVLVNGLCSNRRVE 232
           DADLL VL+N   S +R++
Sbjct: 474 DADLLAVLINAFLSQKRID 492



 Score = 25.8 bits (55), Expect(3) = 6e-12
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 232 DSAYTLLIEMVDKAK 188
           D AYTL ++MVDKA+
Sbjct: 492 DGAYTLFMDMVDKAR 506


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = -2

Query: 116 LKKHNFPPYPEPFDNYISKFGTVEDAREFLKVLSVKQY 3
           +KK N+PP+PEPF  YISKFGTV+DA +FLKVLS K+Y
Sbjct: 532 MKKQNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEY 569


>ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
           gi|241931148|gb|EES04293.1| hypothetical protein
           SORBIDRAFT_03g047260 [Sorghum bicolor]
          Length = 574

 Score = 44.7 bits (104), Expect(3) = 4e-08
 Identities = 20/36 (55%), Positives = 25/36 (69%)
 Frame = -2

Query: 116 LKKHNFPPYPEPFDNYISKFGTVEDAREFLKVLSVK 9
           +K   FP + +PF  YI+K GTVEDAR F K L+VK
Sbjct: 483 MKTCKFPAFVDPFHPYIAKHGTVEDARNFFKALTVK 518



 Score = 32.3 bits (72), Expect(3) = 4e-08
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = -1

Query: 291 ADADLLEVLVNGLCSNRRVE 232
           ADADLL+V++ GLCS+ +VE
Sbjct: 419 ADADLLDVILKGLCSHEKVE 438



 Score = 24.3 bits (51), Expect(3) = 4e-08
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 232 DSAYTLLIEMVDKAK 188
           + AY+L +EMVDKA+
Sbjct: 438 EEAYSLFVEMVDKAE 452