BLASTX nr result

ID: Cimicifuga21_contig00027403 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027403
         (528 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI26153.3| unnamed protein product [Vitis vinifera]               59   4e-07
ref|XP_002277304.1| PREDICTED: uncharacterized protein LOC100266...    59   4e-07
ref|XP_002516820.1| 80 kD MCM3-associated protein, putative [Ric...    57   2e-06

>emb|CBI26153.3| unnamed protein product [Vitis vinifera]
          Length = 1213

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = +1

Query: 175 QRGGSHPLTLGRNPSNSVFYNPFEEAQRPTVSPPRWGTAPKSYFGDSSYQTHQGPSSDAP 354
           QR  S PL   +N S   F +PF EAQ+ ++S   WG  P+     ++  THQ   S +P
Sbjct: 121 QRTRSPPLAHEKNHSLEGFRSPFAEAQQSSLSSSGWGHRPEVPSSYANLPTHQSVGSVSP 180

Query: 355 YVPSLNAATNTPARPSNFQGLRWTRSPP--SANKVYLDN 465
           YV S ++  ++P + ++ Q  + TRSPP   AN+V+  N
Sbjct: 181 YVGSYDSRRSSPTKITDAQVPKRTRSPPILPANEVFQGN 219


>ref|XP_002277304.1| PREDICTED: uncharacterized protein LOC100266559 [Vitis vinifera]
          Length = 1557

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = +1

Query: 175 QRGGSHPLTLGRNPSNSVFYNPFEEAQRPTVSPPRWGTAPKSYFGDSSYQTHQGPSSDAP 354
           QR  S PL   +N S   F +PF EAQ+ ++S   WG  P+     ++  THQ   S +P
Sbjct: 121 QRTRSPPLAHEKNHSLEGFRSPFAEAQQSSLSSSGWGHRPEVPSSYANLPTHQSVGSVSP 180

Query: 355 YVPSLNAATNTPARPSNFQGLRWTRSPP--SANKVYLDN 465
           YV S ++  ++P + ++ Q  + TRSPP   AN+V+  N
Sbjct: 181 YVGSYDSRRSSPTKITDAQVPKRTRSPPILPANEVFQGN 219


>ref|XP_002516820.1| 80 kD MCM3-associated protein, putative [Ricinus communis]
           gi|223543908|gb|EEF45434.1| 80 kD MCM3-associated
           protein, putative [Ricinus communis]
          Length = 1646

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/69 (42%), Positives = 41/69 (59%)
 Frame = +1

Query: 235 NPFEEAQRPTVSPPRWGTAPKSYFGDSSYQTHQGPSSDAPYVPSLNAATNTPARPSNFQG 414
           +P+    RP VS P+W    +S+F D   QT+Q PS+   +V S N+  +  A+ S FQ 
Sbjct: 109 SPYLNDDRPAVSSPQWVNGQRSFFKDDD-QTNQRPSAVTSFVASRNSGISVTAKISRFQD 167

Query: 415 LRWTRSPPS 441
           L+ TRSPPS
Sbjct: 168 LKRTRSPPS 176


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