BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027396
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Rici...    74   2e-11
ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago trunc...    72   6e-11
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...    66   3e-09
ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [V...    66   3e-09
gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]               65   4e-09

>ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
           gi|223550546|gb|EEF52033.1| RNA-dependent RNA
           polymerase, putative [Ricinus communis]
          Length = 983

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/71 (53%), Positives = 53/71 (74%)
 Frame = -1

Query: 278 KGSISSDILTSFPHYGGKLGFLSLITLEQFGTASEVVPLIKCPIGSEINYEILFQLNALL 99
           +G  +SDI  SFP+Y      + L   E++G+ASE+VPL+KC   S++ YEILFQLN+L+
Sbjct: 87  EGLEASDIFKSFPYYTEAREEVILEDGEEWGSASEIVPLVKCGSDSKLPYEILFQLNSLV 146

Query: 98  HSQKISLAAVN 66
           H+QKISLAAV+
Sbjct: 147 HTQKISLAAVD 157


>ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
           gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase
           [Medicago truncatula]
          Length = 1308

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 37/69 (53%), Positives = 49/69 (71%)
 Frame = -1

Query: 272 SISSDILTSFPHYGGKLGFLSLITLEQFGTASEVVPLIKCPIGSEINYEILFQLNALLHS 93
           S  SD+  SFP Y   L  LSL   E+F + +E VPL+KC + S++ YE LFQLN+L+H+
Sbjct: 243 SFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLVHT 302

Query: 92  QKISLAAVN 66
           QKISLA+VN
Sbjct: 303 QKISLASVN 311


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1110

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 35/71 (49%), Positives = 50/71 (70%)
 Frame = -1

Query: 278 KGSISSDILTSFPHYGGKLGFLSLITLEQFGTASEVVPLIKCPIGSEINYEILFQLNALL 99
           +G  +SD   +FP+Y   +  L L   E+F +ASE VPLI+C    ++ YE+LFQLN+L+
Sbjct: 240 EGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCG-SDKLAYEVLFQLNSLV 298

Query: 98  HSQKISLAAVN 66
           H+QKISLAAV+
Sbjct: 299 HTQKISLAAVD 309


>ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
           gi|297733815|emb|CBI15062.3| unnamed protein product
           [Vitis vinifera]
          Length = 1127

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
 Frame = -1

Query: 278 KGSISSDILTSFPHYGGKLGFLSLITLEQ---FGTASEVVPLIKCPIGSEINYEILFQLN 108
           +G  + DI  SFP+Y      L+ +TLEQ   F + S +VPL+KC  G ++ YEILFQLN
Sbjct: 238 EGFPALDIFASFPYYKD----LTELTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLN 293

Query: 107 ALLHSQKISLAAVN 66
           +L+H+QKISLAAV+
Sbjct: 294 SLVHAQKISLAAVD 307


>gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
          Length = 1147

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 34/66 (51%), Positives = 46/66 (69%)
 Frame = -1

Query: 263 SDILTSFPHYGGKLGFLSLITLEQFGTASEVVPLIKCPIGSEINYEILFQLNALLHSQKI 84
           SD+ T  P Y   +   SL    +F + SE+VPL+K P  S++ YEILFQLNAL+H+QKI
Sbjct: 245 SDMSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVHTQKI 304

Query: 83  SLAAVN 66
           S+AAV+
Sbjct: 305 SIAAVD 310