BLASTX nr result

ID: Cimicifuga21_contig00027393 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027393
         (357 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002316799.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
ref|XP_002300406.1| predicted protein [Populus trichocarpa] gi|2...    59   3e-07
gb|ABK92767.1| unknown [Populus trichocarpa] gi|118489754|gb|ABK...    59   3e-07
ref|XP_003564321.1| PREDICTED: transcription elongation factor 1...    56   3e-06
ref|XP_002285261.1| PREDICTED: transcription elongation factor 1...    56   3e-06

>ref|XP_002316799.1| predicted protein [Populus trichocarpa] gi|222859864|gb|EEE97411.1|
           predicted protein [Populus trichocarpa]
          Length = 157

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -3

Query: 355 FSMTIDALTEPIDVYSEWIDECGRVNAHEDDTA 257
           FSMTI ALTEPID+YSEWIDEC RVN+ EDD A
Sbjct: 125 FSMTITALTEPIDIYSEWIDECERVNSLEDDGA 157


>ref|XP_002300406.1| predicted protein [Populus trichocarpa] gi|222847664|gb|EEE85211.1|
           predicted protein [Populus trichocarpa]
          Length = 88

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -3

Query: 355 FSMTIDALTEPIDVYSEWIDECGRVNAHEDDTA 257
           FSMTI ALTEPID+YSEWIDEC RVN+ EDD A
Sbjct: 56  FSMTITALTEPIDIYSEWIDECERVNSLEDDGA 88


>gb|ABK92767.1| unknown [Populus trichocarpa] gi|118489754|gb|ABK96677.1| unknown
           [Populus trichocarpa x Populus deltoides]
          Length = 88

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -3

Query: 355 FSMTIDALTEPIDVYSEWIDECGRVNAHEDDTA 257
           FSMTI ALTEPID+YSEWIDEC RVN+ EDD A
Sbjct: 56  FSMTITALTEPIDIYSEWIDECERVNSLEDDGA 88


>ref|XP_003564321.1| PREDICTED: transcription elongation factor 1 homolog isoform 1
           [Brachypodium distachyon]
           gi|357125278|ref|XP_003564322.1| PREDICTED:
           transcription elongation factor 1 homolog isoform 2
           [Brachypodium distachyon]
          Length = 89

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -3

Query: 355 FSMTIDALTEPIDVYSEWIDECGRVNAHEDD 263
           FS T++ALTEPID+YSEWIDEC RVN  EDD
Sbjct: 56  FSTTVNALTEPIDIYSEWIDECERVNTVEDD 86


>ref|XP_002285261.1| PREDICTED: transcription elongation factor 1 homolog isoform 1
           [Vitis vinifera] gi|225461578|ref|XP_002285263.1|
           PREDICTED: transcription elongation factor 1 homolog
           isoform 2 [Vitis vinifera] gi|302142940|emb|CBI20235.3|
           unnamed protein product [Vitis vinifera]
          Length = 92

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 355 FSMTIDALTEPIDVYSEWIDECGRVNAHEDDTA 257
           FSMT++AL+EPIDVYSEWIDEC RVN  ++D A
Sbjct: 56  FSMTVNALSEPIDVYSEWIDECERVNTLDEDAA 88


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