BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027258
         (1714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17752.3| unnamed protein product [Vitis vinifera]              732   0.0  
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2...   679   0.0  
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ...   650   0.0  
ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containi...   643   0.0  
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi...   636   e-180

>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  732 bits (1889), Expect(2) = 0.0
 Identities = 359/495 (72%), Positives = 412/495 (83%), Gaps = 5/495 (1%)
 Frame = -3

Query: 1625 MPPKPQPTSTNKPYFFYGHRKPSQNRPTVQGGLFSNRQTLNPNHTNKFPKSQNPP--FEF 1452
            MPP+PQP   +K YFFYGHRKPSQNRPTV GGLFSNR TLNP    K P  QNP   F  
Sbjct: 1    MPPQPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNP----KPPTLQNPTTHFNL 56

Query: 1451 HKWDPNSLQPTI--PTKTSAEKYFSVAQSLSPIARYICDSFRKHKKWCPAIISDLDKLRR 1278
              WDP+S +     P+KT  E++F +A++LSPIARYICDSFRKH+ W P +++DL+KLRR
Sbjct: 57   QNWDPDSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNKLRR 116

Query: 1277 VTPKLVTEVLKVQTDPRISSKFFHWAGKQKGFRHDFASYNAFAYCLNRTNYFRAADQVPE 1098
            VTP LV EVLKVQTDP I SKFFHWAGKQKG++H+FASYNAFAYCLNR+N FRAADQVPE
Sbjct: 117  VTPVLVAEVLKVQTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPE 176

Query: 1097 LMNMQGKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDALVKTN 918
            LMNMQGKPP+EKQFEILIRMH DA RGLRVY+VYEKMKKFGIKP VFLYNRIMD LVKT 
Sbjct: 177  LMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTG 236

Query: 917  HLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDVFAYT 738
            HLDLAMSVYEDFKEDGLVEESVT+M+L+KGLCK GRIDEV ELL RMR NLCKPDVFAYT
Sbjct: 237  HLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYT 296

Query: 737  AMIRVLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKK 558
            AM++VL+++ NLDGCL VWEEMRKD V+PD MAYTTL+ ALC  N V +GFE FKEM++K
Sbjct: 297  AMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQK 356

Query: 557  EYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKA 378
            +YLIDRA+YGSLIE FV +  +GSACDLLKDL+ SGYRADL+IYNSLIEG+C+  +VDKA
Sbjct: 357  KYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKA 416

Query: 377  YKLFQFTVQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQKFGLHVIGELSKIFLFM 198
            YKLFQ TV E L P+F+TV P+LV YAE +RMDD+C LL +MQK G  VI +LSK F  M
Sbjct: 417  YKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGFPVIDDLSKFFSVM 476

Query: 197  LGKGEREKL-LQCFD 156
            + KGER KL L+ F+
Sbjct: 477  IEKGERLKLALEVFE 491



 Score = 70.1 bits (170), Expect(2) = 0.0
 Identities = 33/61 (54%), Positives = 50/61 (81%)
 Frame = -1

Query: 184 REKSYCSVSIYSILIESLYTVEEVERALALFEEMKVSDFKPDSYTYSKHNIPCLVDVGDV 5
           + K YCS+SIY+IL+E+++   EV++AL+LF+++K S+FKPDS TYS + I C V+VGDV
Sbjct: 494 KAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYS-NAIICFVEVGDV 552

Query: 4   K 2
           +
Sbjct: 553 Q 553



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 59/281 (20%), Positives = 120/281 (42%), Gaps = 37/281 (13%)
 Frame = -3

Query: 977  GIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEV 798
            G +  + +YN +++ +     +D A  +++    + L    +T   ++    +  R+D+ 
Sbjct: 392  GYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDF 451

Query: 797  FELLGRMRENLCKPDVFAYTAMIRVLISK-ENLDGCLTVWEEMRKDGVDPDAMAYTTLIT 621
              LLG+M++ L  P +   +    V+I K E L   L V+E ++  G    ++ Y  L+ 
Sbjct: 452  CSLLGQMQK-LGFPVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISI-YNILME 509

Query: 620  ALCKRNEVEKGFEFFKEMRKKEYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRA 441
            A+ +  EV+K    F +++   +  D + Y + I  FV    +  AC     +I      
Sbjct: 510  AIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLP 569

Query: 440  DLSIYNSLIEGLCDANRVDKAYKL--------------FQFT------------------ 357
             ++ Y SL++GLC +  +D A  L              F++T                  
Sbjct: 570  SVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVIDV 629

Query: 356  ----VQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQK 246
                +QEG +PD VT + ++    +   +++  K+   M++
Sbjct: 630  LNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRE 670



 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
 Frame = -3

Query: 1058 FEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFK 879
            + IL+      G   +   +++ +K    KP    Y+  +   V+   +  A + Y    
Sbjct: 504  YNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKII 563

Query: 878  EDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCK-PDVFAYTAMIRVLISKENL 702
            E   +     +  L+KGLCK   ID    L+     N+   P  F YT  I       N 
Sbjct: 564  EMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNA 623

Query: 701  DGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKKEYLIDRAV 534
            +  + V  EM ++G  PD + Y+ LI+ +CK   +E+  + F  MR+++ L +  V
Sbjct: 624  EKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEANV 679



 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 62/325 (19%), Positives = 140/325 (43%), Gaps = 8/325 (2%)
 Frame = -3

Query: 1187 GFRHDFASYNAFAYCLNRTNYFRAADQVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRV 1008
            G+R D A YN+    +        A ++ ++   +   P     + ++  +++  R    
Sbjct: 392  GYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDF 451

Query: 1007 YFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKG 828
              +  +M+K G   I  L       + K   L LA+ V+E  K  G    S+ + +L++ 
Sbjct: 452  CSLLGQMQKLGFPVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISI-YNILMEA 510

Query: 827  LCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPD 648
            + + G + +   L   ++++  KPD   Y+  I   +   ++      + ++ +    P 
Sbjct: 511  IHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPS 570

Query: 647  AMAYTTLITALCKRNEVEKGFEFFKEMRKK------EYLIDRAVYGSLIEAFVADRMIGS 486
              AY +L+  LCK  E++      ++          E+     +  +  ++  A+++I  
Sbjct: 571  VAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHAC-KSGNAEKVI-- 627

Query: 485  ACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKLFQFTVQEGL--SPDFVTVNPI 312
              D+L +++  G   D   Y++LI G+C    +++A K+F    +  L    + +  + I
Sbjct: 628  --DVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEI 685

Query: 311  LVLYAEERRMDDYCKLLERMQKFGL 237
            L+ + +++  D    +L  ++ FGL
Sbjct: 686  LIEHMKKKTAD---LVLSGLKFFGL 707


>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
            predicted protein [Populus trichocarpa]
          Length = 728

 Score =  679 bits (1752), Expect(2) = 0.0
 Identities = 328/499 (65%), Positives = 401/499 (80%), Gaps = 7/499 (1%)
 Frame = -3

Query: 1631 P*MPPKPQPTSTNKPYFFYGHRKPSQNRPTVQGGLFSNRQTLNPNHTNKFPKSQNPPFEF 1452
            P  PP P P+   KPYFFYGHRKPSQNRP V+GGLF+NRQT+ P    K P +   PF+ 
Sbjct: 2    PPQPPPPPPSKPLKPYFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPP-KNPITPFKPFDL 60

Query: 1451 HKWDP-----NSLQPTIPTKTSAEKYFSVAQSLSPIARYICDSFRKHK-KWCPAIISDLD 1290
            HKWDP     +  QP+ P    +    +++Q LSPIAR+I D+FRK++ +W P ++++L 
Sbjct: 61   HKWDPQQNLPHQPQPSKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGPEVVTELC 120

Query: 1289 KLRRVTPKLVTEVLKVQTDPRISSKFFHWAGKQKGFRHDFASYNAFAYCLNRTNYFRAAD 1110
            KLRRVTP LV EVLKV+ +P++++KFFHWAGKQKGF+H FASYNAFAY LNR+N+FRAAD
Sbjct: 121  KLRRVTPDLVAEVLKVENNPQLATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAAD 180

Query: 1109 QVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDAL 930
            Q+PELM  QGKPPTEKQFEILIRMHSDA RGLRVY+VY+KM KFG+KP VFLYNRIMD+L
Sbjct: 181  QLPELMEAQGKPPTEKQFEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSL 240

Query: 929  VKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDV 750
            +KT HLDLA+SVYEDF+ DGLVEESVT+M+LIKGLCK GRI+E+ E+LGRMRENLCKPDV
Sbjct: 241  IKTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDV 300

Query: 749  FAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKE 570
            FAYTAM+R L  + NLD CL VWEEM++DGV+PD MAY TL+TALCK   V+KG+E FKE
Sbjct: 301  FAYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKE 360

Query: 569  MRKKEYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANR 390
            M+ +  LIDR +YG L+EAFVAD  IG ACDLLKDL+ SGYRADL IYNSLIEG C+  R
Sbjct: 361  MKGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSGYRADLRIYNSLIEGFCNVKR 420

Query: 389  VDKAYKLFQFTVQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQKFGLHVIGELSKI 210
            VDKA+KLFQ TVQEGL  DF TVNP+L+ YAE ++MDD+CKLL++M+K G  V  +LSK 
Sbjct: 421  VDKAHKLFQVTVQEGLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEKLGFSVFDDLSKF 480

Query: 209  FLFMLGKGEREKL-LQCFD 156
            F +++GK ER  + L+ F+
Sbjct: 481  FSYVVGKPERTMMALEVFE 499



 Score = 52.8 bits (125), Expect(2) = 0.0
 Identities = 31/59 (52%), Positives = 43/59 (72%)
 Frame = -1

Query: 178 KSYCSVSIYSILIESLYTVEEVERALALFEEMKVSDFKPDSYTYSKHNIPCLVDVGDVK 2
           K Y SV IY+IL+E+L T+ E++RAL+LF EMK  + KPDS TYS   I C V+ G+++
Sbjct: 504 KGYSSVPIYNILMEALLTIGEMKRALSLFGEMKDLN-KPDSTTYS-IAIICFVEDGNIQ 560


>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355487951|gb|AES69154.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 767

 Score =  650 bits (1677), Expect(2) = 0.0
 Identities = 323/497 (64%), Positives = 396/497 (79%), Gaps = 8/497 (1%)
 Frame = -3

Query: 1625 MPPKPQPTSTNKPYFFYGHRKPSQNRPTVQGGLFSNRQTLNPNHTNKFPKSQNPP--FEF 1452
            MPP+  PT  NK YFFYGHRKPSQNRPTV+GGLFSNR+TL P      PKS  P   F+ 
Sbjct: 1    MPPQT-PTPPNKFYFFYGHRKPSQNRPTVRGGLFSNRKTLTPPK----PKSTKPTNSFQI 55

Query: 1451 HKWDPNSL-QPTIPTKT---SAEKYFSVAQSLSPIARYICDSFRKHKK-WCPAIISDLDK 1287
             KWDP+ L QP  P+ +   S E  FS +  LSPIAR+I D+FRK+   W P ++++L+K
Sbjct: 56   QKWDPHFLSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNK 115

Query: 1286 LRRVTPKLVTEVLKVQTDPRISSKFFHWAGKQKGFRHDFASYNAFAYCLNRTNYFRAADQ 1107
            LRRVTP LV EVLKVQT+P ++ KFFHW  KQKG+ H+FASYNAF YCLNR N+FRAADQ
Sbjct: 116  LRRVTPTLVAEVLKVQTNPTLAFKFFHWVEKQKGYHHNFASYNAFTYCLNRANHFRAADQ 175

Query: 1106 VPELMNMQGKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMK-KFGIKPIVFLYNRIMDAL 930
            +PELM+ QGKPP+EKQFEILIRMHSDAGRGLRVY VY+KM+ KFG+KP VFLYNRIMDAL
Sbjct: 176  LPELMDAQGKPPSEKQFEILIRMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDAL 235

Query: 929  VKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDV 750
            VKT HLDLA+SVY DF+EDGLVEESVTFM+LIKGLCK G+IDE+ E+LGRMRE LCKPDV
Sbjct: 236  VKTGHLDLALSVYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDV 295

Query: 749  FAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKE 570
            FAYTA++R+++ + NLDGCL VW+EM++D VDPD MAY T+I  L K   V +G+E FKE
Sbjct: 296  FAYTALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKE 355

Query: 569  MRKKEYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANR 390
            M+ K +LIDRA+YGSL+E+FVA   +G A DLLKDL+SSGYRADL +YN+LIEGLC+ N+
Sbjct: 356  MKSKGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNK 415

Query: 389  VDKAYKLFQFTVQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQKFGLHVIGELSKI 210
            V+KAYKLFQ T+QEGL PDF++V P+L+ YAE +RM+++  LLE+M+K G  VI +LSK 
Sbjct: 416  VEKAYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFPVIDDLSKF 475

Query: 209  FLFMLGKGEREKLLQCF 159
            F  ++ K   E  L+ F
Sbjct: 476  FSHLVEKKGPEMALEIF 492



 Score = 64.3 bits (155), Expect(2) = 0.0
 Identities = 34/61 (55%), Positives = 46/61 (75%)
 Frame = -1

Query: 184 REKSYCSVSIYSILIESLYTVEEVERALALFEEMKVSDFKPDSYTYSKHNIPCLVDVGDV 5
           +EKSY SV IY+I +ESL+   +VE+AL+LF+E+K SD +PDS TY+   I CLVD G +
Sbjct: 496 KEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPDSSTYN-IAILCLVDHGQI 554

Query: 4   K 2
           K
Sbjct: 555 K 555



 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 79/365 (21%), Positives = 146/365 (40%), Gaps = 36/365 (9%)
 Frame = -3

Query: 1253 VLKVQTDPRISSKFFHWAGKQK---GFRHDFASYNAFAYCLNRTNYFRAADQVPELMNMQ 1083
            ++++ +D     + +H   K +   G +     YN     L +T +   A  V       
Sbjct: 195  LIRMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKTGHLDLALSVYNDFRED 254

Query: 1082 GKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLA 903
            G       F ILI+     G+   +  V  +M++   KP VF Y  ++  +VK  +LD  
Sbjct: 255  GLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVFAYTALVRIMVKEGNLDGC 314

Query: 902  MSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRV 723
            + V+++ K D +  + + +  +I GL K GR+ E +EL   M+      D   Y +++  
Sbjct: 315  LRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIYGSLVES 374

Query: 722  LISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKKEYLID 543
             ++   +     + +++   G   D   Y  LI  LC  N+VEK ++ F+   ++    D
Sbjct: 375  FVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPD 434

Query: 542  RAVYGSLIEAFVADRMIGSACDLLKDLISSGYRA--DLS--------------------- 432
                  L+ A+   + +     LL+ +   G+    DLS                     
Sbjct: 435  FLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFPVIDDLSKFFSHLVEKKGPEMALEIFTH 494

Query: 431  ----------IYNSLIEGLCDANRVDKAYKLFQFTVQEGLSPDFVTVNPILVLYAEERRM 282
                      IYN  +E L  + +V+KA  LF       L PD  T N  ++   +  ++
Sbjct: 495  LKEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQI 554

Query: 281  DDYCK 267
             + C+
Sbjct: 555  KEACE 559



 Score = 75.5 bits (184), Expect = 4e-11
 Identities = 69/357 (19%), Positives = 152/357 (42%), Gaps = 18/357 (5%)
 Frame = -3

Query: 1187 GFRHDFASYNAFAYCLNRTNYFRAADQVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRV 1008
            G+R D   YN     L   N    A ++ ++   +G  P     + L+  +++A R    
Sbjct: 395  GYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEF 454

Query: 1007 YFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKG 828
            + + EKMKK G  P++   ++    LV+    ++A+ ++   KE   V   + + + ++ 
Sbjct: 455  FMLLEKMKKLGF-PVIDDLSKFFSHLVEKKGPEMALEIFTHLKEKSYVSVEI-YNIFMES 512

Query: 827  LCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPD 648
            L   G++++   L   ++ +  +PD   Y   I  L+    +        ++ +    P 
Sbjct: 513  LHLSGKVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPS 572

Query: 647  AMAYTTLITALCKRNEVEKGFEFFKEMRKK------EYLIDRAVYGSLIEAFVADRMIGS 486
              AY  L   LC   E+++     ++          E+     +   + ++ VA+++I  
Sbjct: 573  VAAYNCLAKGLCNIGEIDEAMLLVRDCLGNVTSGPMEFKYCLTII-RMCKSNVAEKLI-- 629

Query: 485  ACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKLFQFTVQEGL--SPDFVTVNPI 312
              D+L +++  G   D  + +++I G+C    +++A K+F    +  L    D +  + +
Sbjct: 630  --DVLNEMMQEGCSLDNVVCSAIISGMCKYGTIEEARKVFSILRERKLLTESDTIVYDEL 687

Query: 311  LVLYAEERRMD------DYCKLLERMQKFGLHVIGE----LSKIFLFMLGKGEREKL 171
            L+ + +++  D       +  L  +++  G  +  E    LSK+      KG+ E L
Sbjct: 688  LIDHMKKKTADLVISGLKFFGLESKLKSKGCKLPSEEDNALSKVISEAFHKGKEEPL 744



 Score = 64.3 bits (155), Expect = 9e-08
 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 3/220 (1%)
 Frame = -3

Query: 1019 GLRVYFVYEKMKKF---GIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVT 849
            G +V   ++ +K     G +  + +YN +++ L   N ++ A  +++   ++GL  + ++
Sbjct: 378  GNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEKAYKLFQVTIQEGLEPDFLS 437

Query: 848  FMVLIKGLCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRVLISKENLDGCLTVWEEMR 669
               L+    +  R++E F LL +M++ L  P +   +     L+ K+  +  L ++  ++
Sbjct: 438  VKPLLLAYAEAKRMEEFFMLLEKMKK-LGFPVIDDLSKFFSHLVEKKGPEMALEIFTHLK 496

Query: 668  KDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKKEYLIDRAVYGSLIEAFVADRMIG 489
            +         Y   + +L    +VEK    F E++  +   D + Y   I   V    I 
Sbjct: 497  EKSY-VSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQIK 555

Query: 488  SACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKL 369
             AC+    +I       ++ YN L +GLC+   +D+A  L
Sbjct: 556  EACECHNKIIEMSSIPSVAAYNCLAKGLCNIGEIDEAMLL 595


>ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Vitis vinifera]
          Length = 1294

 Score =  643 bits (1658), Expect(2) = 0.0
 Identities = 327/498 (65%), Positives = 378/498 (75%), Gaps = 5/498 (1%)
 Frame = -3

Query: 1634 NP*MPPKPQPTSTNKPYFFYGHRKPSQNRPTVQGGLFSNRQTLNPNHTNKFPKSQNPP-- 1461
            N  MPP+PQP   +K YFFYGHRKPSQNRPTV GGLFSNR TLNP    K P  QNP   
Sbjct: 537  NSKMPPQPQPPKPHKFYFFYGHRKPSQNRPTVHGGLFSNRTTLNP----KPPTLQNPTTH 592

Query: 1460 FEFHKWDPNSLQPTI--PTKTSAEKYFSVAQSLSPIARYICDSFRKHKKWCPAIISDLDK 1287
            F    WDP+S +     P+KT  E++F +A++LSPIARYICDSFRKH+ W P +++DL+K
Sbjct: 593  FNLQNWDPDSPKALAIPPSKTPCERFFDIAKNLSPIARYICDSFRKHRNWGPPVVADLNK 652

Query: 1286 LRRVTPKLVTEVLKVQTDPRISSKFFHWAGKQKGFRHDFASYNAFAYCLNRTNYFRAADQ 1107
            LRRVTP LV EVLKVQTDP I SKFFHWAGKQKG++H+FASYNAFAYCLNR+N FRAADQ
Sbjct: 653  LRRVTPVLVAEVLKVQTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQ 712

Query: 1106 VPELMNMQGKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDALV 927
            VPELMNMQGKPP+EKQFEILIRMH DA RGLRVY+VYEKMKKFGIKP VFLYNRIMD LV
Sbjct: 713  VPELMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLV 772

Query: 926  KTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDVF 747
            KT HLDLAMSVYEDFKEDGLVEESVT+M+L+KGLCK GRIDEV E+   MR++  +PDV 
Sbjct: 773  KTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLEVWEEMRKDKVEPDVM 832

Query: 746  AYTAMIRVLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEM 567
            AYT                                   TL+ ALC  N V +GFE FKEM
Sbjct: 833  AYT-----------------------------------TLVAALCNGNRVGEGFELFKEM 857

Query: 566  RKKEYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANRV 387
            ++K+YLIDRA+YGSLIE FV +  +GSACDLLKDL+ SGYRADL+IYNSLIEG+C+  +V
Sbjct: 858  KQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQV 917

Query: 386  DKAYKLFQFTVQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQKFGLHVIGELSKIF 207
            DKAYKLFQ TV E L P+F+TV P+LV YAE +RMDD+C LL +MQK G  VI +LSK F
Sbjct: 918  DKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGFPVIDDLSKFF 977

Query: 206  LFMLGKGEREKL-LQCFD 156
              M+ KGER KL L+ F+
Sbjct: 978  SVMIEKGERLKLALEVFE 995



 Score = 70.1 bits (170), Expect(2) = 0.0
 Identities = 33/61 (54%), Positives = 50/61 (81%)
 Frame = -1

Query: 184  REKSYCSVSIYSILIESLYTVEEVERALALFEEMKVSDFKPDSYTYSKHNIPCLVDVGDV 5
            + K YCS+SIY+IL+E+++   EV++AL+LF+++K S+FKPDS TYS + I C V+VGDV
Sbjct: 998  KAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYS-NAIICFVEVGDV 1056

Query: 4    K 2
            +
Sbjct: 1057 Q 1057



 Score = 70.5 bits (171), Expect = 1e-09
 Identities = 59/281 (20%), Positives = 120/281 (42%), Gaps = 37/281 (13%)
 Frame = -3

Query: 977  GIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEV 798
            G +  + +YN +++ +     +D A  +++    + L    +T   ++    +  R+D+ 
Sbjct: 896  GYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDF 955

Query: 797  FELLGRMRENLCKPDVFAYTAMIRVLISK-ENLDGCLTVWEEMRKDGVDPDAMAYTTLIT 621
              LLG+M++ L  P +   +    V+I K E L   L V+E ++  G    ++ Y  L+ 
Sbjct: 956  CSLLGQMQK-LGFPVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISI-YNILME 1013

Query: 620  ALCKRNEVEKGFEFFKEMRKKEYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRA 441
            A+ +  EV+K    F +++   +  D + Y + I  FV    +  AC     +I      
Sbjct: 1014 AIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLP 1073

Query: 440  DLSIYNSLIEGLCDANRVDKAYKL--------------FQFT------------------ 357
             ++ Y SL++GLC +  +D A  L              F++T                  
Sbjct: 1074 SVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVIDV 1133

Query: 356  ----VQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQK 246
                +QEG +PD VT + ++    +   +++  K+   M++
Sbjct: 1134 LNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRE 1174



 Score = 68.6 bits (166), Expect = 5e-09
 Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
 Frame = -3

Query: 1058 FEILIRMHSDAGRGLRVYFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFK 879
            + IL+      G   +   +++ +K    KP    Y+  +   V+   +  A + Y    
Sbjct: 1008 YNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKII 1067

Query: 878  EDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCK-PDVFAYTAMIRVLISKENL 702
            E   +     +  L+KGLCK   ID    L+     N+   P  F YT  I       N 
Sbjct: 1068 EMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNA 1127

Query: 701  DGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKKEYLIDRAV 534
            +  + V  EM ++G  PD + Y+ LI+ +CK   +E+  + F  MR+++ L +  V
Sbjct: 1128 EKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEANV 1183



 Score = 62.4 bits (150), Expect = 4e-07
 Identities = 62/325 (19%), Positives = 140/325 (43%), Gaps = 8/325 (2%)
 Frame = -3

Query: 1187 GFRHDFASYNAFAYCLNRTNYFRAADQVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRV 1008
            G+R D A YN+    +        A ++ ++   +   P     + ++  +++  R    
Sbjct: 896  GYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDF 955

Query: 1007 YFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKG 828
              +  +M+K G   I  L       + K   L LA+ V+E  K  G    S+ + +L++ 
Sbjct: 956  CSLLGQMQKLGFPVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISI-YNILMEA 1014

Query: 827  LCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPD 648
            + + G + +   L   ++++  KPD   Y+  I   +   ++      + ++ +    P 
Sbjct: 1015 IHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPS 1074

Query: 647  AMAYTTLITALCKRNEVEKGFEFFKEMRKK------EYLIDRAVYGSLIEAFVADRMIGS 486
              AY +L+  LCK  E++      ++          E+     +  +  ++  A+++I  
Sbjct: 1075 VAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHAC-KSGNAEKVI-- 1131

Query: 485  ACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKLFQFTVQEGL--SPDFVTVNPI 312
              D+L +++  G   D   Y++LI G+C    +++A K+F    +  L    + +  + I
Sbjct: 1132 --DVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEI 1189

Query: 311  LVLYAEERRMDDYCKLLERMQKFGL 237
            L+ + +++  D    +L  ++ FGL
Sbjct: 1190 LIEHMKKKTAD---LVLSGLKFFGL 1211


>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
            [Glycine max]
          Length = 733

 Score =  636 bits (1640), Expect = e-180
 Identities = 312/480 (65%), Positives = 375/480 (78%), Gaps = 2/480 (0%)
 Frame = -3

Query: 1622 PPKPQPTSTNKPYFFYGHRKPSQNRPTVQGGLFSNRQTLNPNHTNKFPKSQNPPFEFHKW 1443
            PP   P  TNK YFFYGHR PSQNRPTV+GGLFSNRQTLNPN +   PK    PF    W
Sbjct: 16   PPFTTPKPTNKFYFFYGHRNPSQNRPTVRGGLFSNRQTLNPNPSQ--PKPTTKPFNIKNW 73

Query: 1442 DPNSLQPTIPTKTSAEKYFSVAQSLSPIARYICDSFRKH-KKWCPAIISDLDKLRRVTPK 1266
            DP+ L     +  S     S +  LSPIAR+I D+FR++  KWCP + ++L KLRR+TP 
Sbjct: 74   DPHFLSNP-NSNPSPSTLSSASLRLSPIARFIVDAFRRNDNKWCPNVAAELSKLRRITPN 132

Query: 1265 LVTEVLKVQTDPRISSKFFHWAGKQKGFRHDFASYNAFAYCLNRTNYFRAADQVPELMNM 1086
            LV EVLKVQT+  ++SKFFHWAG Q+G+ H+FASYNA AYCLNR + FRAADQ+PELM  
Sbjct: 133  LVAEVLKVQTNHTLASKFFHWAGSQRGYHHNFASYNALAYCLNRHHQFRAADQLPELMES 192

Query: 1085 QGKPPTEKQFEILIRMHSDAGRGLRVYFVYEKMK-KFGIKPIVFLYNRIMDALVKTNHLD 909
            QGKPP+EKQFEILIRMHSDA RGLRVY VYEKM+ KFG+KP VFLYNR+MDALV+T HLD
Sbjct: 193  QGKPPSEKQFEILIRMHSDANRGLRVYHVYEKMRNKFGVKPRVFLYNRVMDALVRTGHLD 252

Query: 908  LAMSVYEDFKEDGLVEESVTFMVLIKGLCKEGRIDEVFELLGRMRENLCKPDVFAYTAMI 729
            LA+SVY+D KEDGLVEESVTFMVL+KGLCK GRIDE+ E+LGRMRE LCKPDVFAYTA++
Sbjct: 253  LALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEMLEVLGRMRERLCKPDVFAYTALV 312

Query: 728  RVLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKKEYL 549
            ++L+   NLD CL VWEEM++D V+PD  AY T+I  L K   V++G+E F+EM+ K  L
Sbjct: 313  KILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQEGYELFREMKGKGCL 372

Query: 548  IDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKL 369
            +DR +YG+L+EAFVA+  +  A DLLKDL+SSGYRADL IY  LIEGLC+ NRV KAYKL
Sbjct: 373  VDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLIEGLCNLNRVQKAYKL 432

Query: 368  FQFTVQEGLSPDFVTVNPILVLYAEERRMDDYCKLLERMQKFGLHVIGELSKIFLFMLGK 189
            FQ TV+EGL PDF+TV P+LV YAE  RM+++CKLLE+MQK G  VI +LSK F  ++ K
Sbjct: 433  FQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLSKFFSVLVEK 492



 Score = 74.3 bits (181), Expect = 9e-11
 Identities = 69/325 (21%), Positives = 140/325 (43%), Gaps = 8/325 (2%)
 Frame = -3

Query: 1187 GFRHDFASYNAFAYCLNRTNYFRAADQVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRV 1008
            G+R D   Y      L   N  + A ++ +L   +G  P     + L+  +++A R    
Sbjct: 405  GYRADLGIYICLIEGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEF 464

Query: 1007 YFVYEKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKG 828
              + E+M+K G  P++   ++    LV+     +A+  +   KE G V   + + + +  
Sbjct: 465  CKLLEQMQKLGF-PVIADLSKFFSVLVEKKGPIMALETFGQLKEKGHVSVEI-YNIFMDS 522

Query: 827  LCKEGRIDEVFELLGRMRENLCKPDVFAYTAMIRVLISKENLDGCLTVWEEMRKDGVDPD 648
            L K G + +   L   M+    KPD F Y   I  L+    +         + +    P 
Sbjct: 523  LHKIGEVKKALSLFDEMKGLSLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPS 582

Query: 647  AMAYTTLITALCKRNEVEKGFEFFKEMRKK------EYLIDRAVYGSLIEAFVADRMIGS 486
              AY++L   LC+  E+++     ++          E+     +  +  ++ VA+++I  
Sbjct: 583  VAAYSSLTKGLCQIGEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHAC-KSNVAEKVI-- 639

Query: 485  ACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKAYKLFQFTVQEGLSPDFVTV--NPI 312
              D+L ++I  G   D  IY S+I G+C    +++A K+F    +     +  T+  + +
Sbjct: 640  --DVLNEMIEQGCSLDNVIYCSIISGMCKHGTIEEARKVFSNLRERNFLTESNTIVYDEL 697

Query: 311  LVLYAEERRMDDYCKLLERMQKFGL 237
            L+ + +++  D    +L  ++ FGL
Sbjct: 698  LIDHMKKKTAD---LVLSSLKFFGL 719



 Score = 65.9 bits (159), Expect = 3e-08
 Identities = 70/303 (23%), Positives = 115/303 (37%), Gaps = 34/303 (11%)
 Frame = -3

Query: 1175 DFASYNAFAYCLNRTNYFRAADQVPELMNMQGKPPTEKQFEILIRMHSDAGRGLRVYFVY 996
            D  +Y A    L       A  +V E M      P  K +  +I   +  GR    Y ++
Sbjct: 304  DVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQEGYELF 363

Query: 995  EKMKKFGIKPIVFLYNRIMDALVKTNHLDLAMSVYEDFKEDGLVEESVTFMVLIKGLCKE 816
             +MK  G      +Y  +++A V    ++LA  + +D    G   +   ++ LI+GLC  
Sbjct: 364  REMKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLIEGLCNL 423

Query: 815  GRIDEVFELLG-RMRENL------CKPDVFAYTAMIR----------------------- 726
             R+ + ++L    +RE L       KP + AY    R                       
Sbjct: 424  NRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLS 483

Query: 725  ----VLISKENLDGCLTVWEEMRKDGVDPDAMAYTTLITALCKRNEVEKGFEFFKEMRKK 558
                VL+ K+     L  + ++++ G       Y   + +L K  EV+K    F EM+  
Sbjct: 484  KFFSVLVEKKGPIMALETFGQLKEKG-HVSVEIYNIFMDSLHKIGEVKKALSLFDEMKGL 542

Query: 557  EYLIDRAVYGSLIEAFVADRMIGSACDLLKDLISSGYRADLSIYNSLIEGLCDANRVDKA 378
                D   Y + I   V    I  AC     +I       ++ Y+SL +GLC    +D+A
Sbjct: 543  SLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEA 602

Query: 377  YKL 369
              L
Sbjct: 603  MLL 605



 Score = 65.9 bits (159), Expect = 3e-08
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 18/102 (17%)
 Frame = -1

Query: 253 CRSLDYMSLANFPK-------FSYLC*VKG-----------REKSYCSVSIYSILIESLY 128
           C+ L+ M    FP        FS L   KG           +EK + SV IY+I ++SL+
Sbjct: 465 CKLLEQMQKLGFPVIADLSKFFSVLVEKKGPIMALETFGQLKEKGHVSVEIYNIFMDSLH 524

Query: 127 TVEEVERALALFEEMKVSDFKPDSYTYSKHNIPCLVDVGDVK 2
            + EV++AL+LF+EMK    KPDS+TY    I CLVD+G++K
Sbjct: 525 KIGEVKKALSLFDEMKGLSLKPDSFTYCT-AILCLVDLGEIK 565