BLASTX nr result
ID: Cimicifuga21_contig00027220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00027220
(1041 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containi... 442 e-122
ref|XP_002532904.1| pentatricopeptide repeat-containing protein,... 427 e-118
ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|2... 426 e-118
ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containi... 416 e-116
ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containi... 414 e-114
>ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 442 bits (1137), Expect = e-122
Identities = 213/311 (68%), Positives = 258/311 (82%), Gaps = 1/311 (0%)
Frame = -3
Query: 1039 NTVLGGYVKAGELNAAFELFEKMPERNGVSWSTMVSGYSKAGFMNMARMLFDKMPVKNLV 860
NT+L GYVKAGE+NAAFELFEKMP RN VSWSTMV GYSKAG M+MAR+LFDKMPVKNLV
Sbjct: 218 NTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLV 277
Query: 859 HWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPDSGTFTSILAACAKSGLIALGERIHVSV 680
WTIMISGYAEKGLAK+A +LY+QME+AGL+ D GT SIL+ACA SGL+ LG+R+H S+
Sbjct: 278 PWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASI 337
Query: 679 DRSSLRHDTQVCNALVDMYAKCGDLDKAMSIFDGMVERDVISWNSMLHGLAMNGHGEMAL 500
+R+ + T V NAL+DMYAKCG L+ A+SIF GMV +DV+SWN+++ GLAM+GHGE AL
Sbjct: 338 ERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKAL 397
Query: 499 ELFSRMRLEGVKPDGVTFIGVLCACTHVGLVNDGRHYFSIMEKYYGIVPEIEHYGCMIDL 320
+LFSRM+ EG PD VTF+GVLCACTH G V++G HYF ME+ YG+ PE+EHYGCM+DL
Sbjct: 398 QLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDL 457
Query: 319 LGRGGYLKEAFELIKSMPMEPNAIIWGTLLEACRMHNDARLA-EVIDQLIRLESSDANAY 143
LGRGG LKEAF L+ SMP+EPNAIIWGTLL ACRMH+ LA EV D+L++ E SD+
Sbjct: 458 LGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNL 517
Query: 142 AILSYMYATAG 110
++LS +YA AG
Sbjct: 518 SMLSNIYAAAG 528
Score = 82.4 bits (202), Expect = 2e-13
Identities = 62/239 (25%), Positives = 114/239 (47%), Gaps = 2/239 (0%)
Frame = -3
Query: 940 MVSGYSKAGFMNMARMLFDKMPVKNLVHWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPD 761
+++ +S M +A +F+++ +++ + +I + AFS++ +M+ +G+ D
Sbjct: 55 LIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCAD 114
Query: 760 SGTFTSILAACAKSGLIALGERIHVSVDRSSLRHDTQVCNALVDMYAKCG--DLDKAMSI 587
+ T+ +L AC+ + + E IH V++ D V N+L+D Y KCG + A +
Sbjct: 115 NFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKV 174
Query: 586 FDGMVERDVISWNSMLHGLAMNGHGEMALELFSRMRLEGVKPDGVTFIGVLCACTHVGLV 407
F+ M ERD +SWNSM+ GL G A LF M + D V++ +L G +
Sbjct: 175 FEVMAERDTVSWNSMIGGLVKVGELGEARRLFDEM----PERDTVSWNTILDGYVKAGEM 230
Query: 406 NDGRHYFSIMEKYYGIVPEIEHYGCMIDLLGRGGYLKEAFELIKSMPMEPNAIIWGTLL 230
N F + EK + + M+ + G + A L MP++ N + W ++
Sbjct: 231 NAA---FELFEKM--PARNVVSWSTMVLGYSKAGDMDMARILFDKMPVK-NLVPWTIMI 283
>ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527338|gb|EEF29484.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 604
Score = 427 bits (1099), Expect(2) = e-118
Identities = 209/316 (66%), Positives = 253/316 (80%), Gaps = 1/316 (0%)
Frame = -3
Query: 1039 NTVLGGYVKAGELNAAFELFEKMPERNGVSWSTMVSGYSKAGFMNMARMLFDKMPVKNLV 860
NT+L GYVKAGE++ AF LFEKMPERN VSWSTMVSGY K G M MARMLFDKMP KNLV
Sbjct: 224 NTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLV 283
Query: 859 HWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPDSGTFTSILAACAKSGLIALGERIHVSV 680
WTI+ISG+AEKGLAKEA +LY+QME AGL+PD GT SILAACA+SGL+ LG+++H S+
Sbjct: 284 TWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASI 343
Query: 679 DRSSLRHDTQVCNALVDMYAKCGDLDKAMSIFDGMVERDVISWNSMLHGLAMNGHGEMAL 500
+ ++ V NALVDMYAKCG +DKA+SIF+ M RD++SWN ML GLAM+GHGE A+
Sbjct: 344 KKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAI 403
Query: 499 ELFSRMRLEGVKPDGVTFIGVLCACTHVGLVNDGRHYFSIMEKYYGIVPEIEHYGCMIDL 320
+LFS+M+ EG KPD VT I +LCACTH G V+ G YF+ ME+ +GIVP IEHYGCMIDL
Sbjct: 404 QLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDL 463
Query: 319 LGRGGYLKEAFELIKSMPMEPNAIIWGTLLEACRMHNDARLAE-VIDQLIRLESSDANAY 143
LGRGG L+EAF L++SMPMEPN +IWGTLL ACR+HN LAE V+D+LI LE SD Y
Sbjct: 464 LGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNY 523
Query: 142 AILSYMYATAGTETSL 95
++LS ++A AG S+
Sbjct: 524 SMLSNIFAAAGDWNSV 539
Score = 25.4 bits (54), Expect(2) = e-118
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 101 VA*VRLQMKGTGNQYQPWATSVEV 30
VA +RLQMK TG Q A+S+E+
Sbjct: 539 VANMRLQMKSTGVQKPSGASSIEL 562
Score = 93.6 bits (231), Expect = 7e-17
Identities = 67/241 (27%), Positives = 122/241 (50%), Gaps = 4/241 (1%)
Frame = -3
Query: 940 MVSGYSKAGFMNMARMLFDKMPVKNLVHWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPD 761
++S +S MN+A +F+++ N+ + +I + + + +AF+ + M+K GL D
Sbjct: 61 LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120
Query: 760 SGTFTSILAACAKSGLIALGERIHVSVDRSSLRHDTQVCNALVDMYAKCG--DLDKAMSI 587
+ T+ +L AC G + + IH V++ D V N+L+D Y+KCG ++ AM +
Sbjct: 121 NFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKL 180
Query: 586 FDGMVERDVISWNSMLHGLAMNGHGEMALELFSRMRLEGVKPDGVTFIGVLCACTHVGLV 407
F M E+D++SWNSM+ GL G A +LF M + D V++ +L G +
Sbjct: 181 FMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM----AERDAVSWNTILDGYVKAGEM 236
Query: 406 NDGRHYFSIMEKYYGIVPE--IEHYGCMIDLLGRGGYLKEAFELIKSMPMEPNAIIWGTL 233
+ F++ EK +PE + + M+ + G ++ A L MP + N + W +
Sbjct: 237 SQA---FNLFEK----MPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFK-NLVTWTII 288
Query: 232 L 230
+
Sbjct: 289 I 289
>ref|XP_002305377.1| predicted protein [Populus trichocarpa] gi|222848341|gb|EEE85888.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 426 bits (1096), Expect(2) = e-118
Identities = 204/316 (64%), Positives = 254/316 (80%), Gaps = 1/316 (0%)
Frame = -3
Query: 1039 NTVLGGYVKAGELNAAFELFEKMPERNGVSWSTMVSGYSKAGFMNMARMLFDKMPVKNLV 860
NT+L GYVKAGE+N AF LFE MPERN VSWSTMVSGY KAG M MARMLFD+MPVKNLV
Sbjct: 47 NTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLV 106
Query: 859 HWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPDSGTFTSILAACAKSGLIALGERIHVSV 680
WTI++SGYA KGLAK+A ++QME+AGL+PD GT SILA+CA+SGL+ LG+R+H S+
Sbjct: 107 SWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSI 166
Query: 679 DRSSLRHDTQVCNALVDMYAKCGDLDKAMSIFDGMVERDVISWNSMLHGLAMNGHGEMAL 500
+R + V NALVDMYAKCG +D+A+S+F+GM ++D++SWN ML GLAM+GHGE AL
Sbjct: 167 ERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKAL 226
Query: 499 ELFSRMRLEGVKPDGVTFIGVLCACTHVGLVNDGRHYFSIMEKYYGIVPEIEHYGCMIDL 320
+LFS MR EG +PD VT + VLCAC H G V++G YF+ ME+ YGIVP IEHYGCM+DL
Sbjct: 227 QLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDL 286
Query: 319 LGRGGYLKEAFELIKSMPMEPNAIIWGTLLEACRMHNDARLA-EVIDQLIRLESSDANAY 143
LGRGG LKEA+ L++SMP+EPN +IWGTLL ACRMHN LA EV+D L +LE SD Y
Sbjct: 287 LGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNY 346
Query: 142 AILSYMYATAGTETSL 95
++LS ++A+AG +S+
Sbjct: 347 SLLSNIFASAGDWSSV 362
Score = 25.0 bits (53), Expect(2) = e-118
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 101 VA*VRLQMKGTGNQYQPWATSVEV 30
VA VRLQMK G Q A+S+EV
Sbjct: 362 VANVRLQMKNFGIQKPSGASSIEV 385
>ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
[Glycine max]
Length = 604
Score = 416 bits (1070), Expect(2) = e-116
Identities = 205/312 (65%), Positives = 247/312 (79%), Gaps = 2/312 (0%)
Frame = -3
Query: 1039 NTVLGGYVKAGELNAAFELFEKMPERNGVSWSTMVSGYSKAGFMNMARMLFDKMPVKNLV 860
NT+L GY KAGE++ AFELFE+MP RN VSWSTMV GYSK G M+MARMLFD+ PVKN+V
Sbjct: 223 NTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVV 282
Query: 859 HWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPDSGTFTSILAACAKSGLIALGERIHVSV 680
WT +I+GYAEKGLA+EA LY +ME+AG+ PD G SILAACA+SG++ LG+RIH S+
Sbjct: 283 LWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASM 342
Query: 679 DRSSLRHDTQVCNALVDMYAKCGDLDKAMSIFDGMV-ERDVISWNSMLHGLAMNGHGEMA 503
R R +V NA +DMYAKCG LD A +F GM+ ++DV+SWNSM+ G AM+GHGE A
Sbjct: 343 RRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKA 402
Query: 502 LELFSRMRLEGVKPDGVTFIGVLCACTHVGLVNDGRHYFSIMEKYYGIVPEIEHYGCMID 323
LELFS M EG +PD TF+G+LCACTH GLVN+GR YF MEK YGIVP++EHYGCM+D
Sbjct: 403 LELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMD 462
Query: 322 LLGRGGYLKEAFELIKSMPMEPNAIIWGTLLEACRMHNDARLAE-VIDQLIRLESSDANA 146
LLGRGG+LKEAF L++SMPMEPNAII GTLL ACRMHND LA V +QL +LE SD
Sbjct: 463 LLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGN 522
Query: 145 YAILSYMYATAG 110
Y++LS +YA AG
Sbjct: 523 YSLLSNIYAQAG 534
Score = 28.1 bits (61), Expect(2) = e-116
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 104 DVA*VRLQMKGTGNQYQPWATSVEV 30
+VA VRLQMK TG + A+S+EV
Sbjct: 538 NVANVRLQMKNTGGEKPSGASSIEV 562
Score = 94.4 bits (233), Expect = 4e-17
Identities = 69/255 (27%), Positives = 116/255 (45%), Gaps = 3/255 (1%)
Frame = -3
Query: 940 MVSGYSKAGFMNMARMLFDKMPVKNLVHWTIMISGYAEKGLAKEA-FSLYDQMEKAGLEP 764
+++ +S + A +F+ +P N+ + +I +A + F+ + QM+K GL P
Sbjct: 59 LIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFP 118
Query: 763 DSGTFTSILAACAKSGLIALGERIHVSVDRSSLRHDTQVCNALVDMYAKCGD--LDKAMS 590
D+ T+ +L AC+ + L IH V++ D V N+L+D Y++CG+ LD AMS
Sbjct: 119 DNFTYPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMS 178
Query: 589 IFDGMVERDVISWNSMLHGLAMNGHGEMALELFSRMRLEGVKPDGVTFIGVLCACTHVGL 410
+F M ERDV++WNSM+ GL G + A +LF M PD
Sbjct: 179 LFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEM------PD---------------- 216
Query: 409 VNDGRHYFSIMEKYYGIVPEIEHYGCMIDLLGRGGYLKEAFELIKSMPMEPNAIIWGTLL 230
++ + M+D + G + AFEL + MP N + W T++
Sbjct: 217 ------------------RDMVSWNTMLDGYAKAGEMDTAFELFERMPWR-NIVSWSTMV 257
Query: 229 EACRMHNDARLAEVI 185
D +A ++
Sbjct: 258 CGYSKGGDMDMARML 272
>ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
[Glycine max]
Length = 604
Score = 414 bits (1063), Expect(2) = e-114
Identities = 201/312 (64%), Positives = 246/312 (78%), Gaps = 2/312 (0%)
Frame = -3
Query: 1039 NTVLGGYVKAGELNAAFELFEKMPERNGVSWSTMVSGYSKAGFMNMARMLFDKMPVKNLV 860
NT+L GY KAGE++ AFELFE+MP+RN VSWSTMV GYSK G M+MAR+LFD+ P KN+V
Sbjct: 223 NTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVV 282
Query: 859 HWTIMISGYAEKGLAKEAFSLYDQMEKAGLEPDSGTFTSILAACAKSGLIALGERIHVSV 680
WT +I+GYAEKG +EA LY +ME+AGL PD G SILAACA+SG++ LG+RIH S+
Sbjct: 283 LWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASM 342
Query: 679 DRSSLRHDTQVCNALVDMYAKCGDLDKAMSIFDGMV-ERDVISWNSMLHGLAMNGHGEMA 503
R R T+V NA +DMYAKCG LD A +F GM+ ++DV+SWNSM+ G AM+GHGE A
Sbjct: 343 RRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKA 402
Query: 502 LELFSRMRLEGVKPDGVTFIGVLCACTHVGLVNDGRHYFSIMEKYYGIVPEIEHYGCMID 323
LELFSRM EG +PD TF+G+LCACTH GLVN+GR YF MEK YGIVP++EHYGCM+D
Sbjct: 403 LELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMD 462
Query: 322 LLGRGGYLKEAFELIKSMPMEPNAIIWGTLLEACRMHNDARLAE-VIDQLIRLESSDANA 146
LLGRGG+LKEAF L++SMPMEPNAII GTLL ACRMHND A V +QL ++E +D
Sbjct: 463 LLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGN 522
Query: 145 YAILSYMYATAG 110
Y++LS +YA AG
Sbjct: 523 YSLLSNIYAQAG 534
Score = 26.9 bits (58), Expect(2) = e-114
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 104 DVA*VRLQMKGTGNQYQPWATSVEV 30
+VA VRLQM TG Q A+S+EV
Sbjct: 538 NVANVRLQMMNTGGQKPSGASSIEV 562
Score = 93.2 bits (230), Expect = 9e-17
Identities = 70/240 (29%), Positives = 116/240 (48%), Gaps = 3/240 (1%)
Frame = -3
Query: 940 MVSGYSKAGFMNMARMLFDKMPVKNLVHWTIMISGYAEKGLAKEA-FSLYDQMEKAGLEP 764
+++ +S + A +F+ +P N+ + +I +A F+ + QM+K GL P
Sbjct: 59 LIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFP 118
Query: 763 DSGTFTSILAACAKSGLIALGERIHVSVDRSSLRHDTQVCNALVDMYAKCGD--LDKAMS 590
D+ T+ +L AC + L IH V++ D V N+L+D Y++CG LD AMS
Sbjct: 119 DNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMS 178
Query: 589 IFDGMVERDVISWNSMLHGLAMNGHGEMALELFSRMRLEGVKPDGVTFIGVLCACTHVGL 410
+F M ERDV++WNSM+ GL G E A +LF M + D V++ +L G
Sbjct: 179 LFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEM----PERDMVSWNTMLDGYAKAGE 234
Query: 409 VNDGRHYFSIMEKYYGIVPEIEHYGCMIDLLGRGGYLKEAFELIKSMPMEPNAIIWGTLL 230
++ F M + I + M+ +GG + A L P + N ++W T++
Sbjct: 235 MDRAFELFERMPQ-----RNIVSWSTMVCGYSKGGDMDMARVLFDRCPAK-NVVLWTTII 288