BLASTX nr result

ID: Cimicifuga21_contig00027215 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027215
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529293.1| ring finger protein, putative [Ricinus commu...   146   2e-33
ref|XP_002281024.2| PREDICTED: RING-H2 finger protein ATL16-like...   141   5e-32
emb|CAN69298.1| hypothetical protein VITISV_043412 [Vitis vinifera]   141   5e-32
ref|XP_002314635.1| predicted protein [Populus trichocarpa] gi|2...   136   2e-30
ref|XP_002532367.1| ring finger protein, putative [Ricinus commu...   131   6e-29

>ref|XP_002529293.1| ring finger protein, putative [Ricinus communis]
           gi|223531217|gb|EEF33062.1| ring finger protein,
           putative [Ricinus communis]
          Length = 376

 Score =  146 bits (368), Expect = 2e-33
 Identities = 63/95 (66%), Positives = 81/95 (85%)
 Frame = +3

Query: 24  EIGQRDLLECAVCLNEFQEEEKLRVLPKCSHVFHIDCIDIWLQNNANCPLCRSSISASTT 203
           +IG R L ECAVCLNEFQE EKLR++P CSHVFHIDCID+WLQNNANCPLCR+SIS++T 
Sbjct: 124 DIGGRTLSECAVCLNEFQENEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRNSISSTTR 183

Query: 204 QPPANQIIPPTSSLQDQTPFTDTIVSGDQDFVVIE 308
             P ++II P+SS QD  P++++++ GD+D+VVIE
Sbjct: 184 SIPFDRIIAPSSSPQDPNPYSESLIGGDEDYVVIE 218


>ref|XP_002281024.2| PREDICTED: RING-H2 finger protein ATL16-like [Vitis vinifera]
          Length = 359

 Score =  141 bits (356), Expect = 5e-32
 Identities = 63/95 (66%), Positives = 79/95 (83%)
 Frame = +3

Query: 24  EIGQRDLLECAVCLNEFQEEEKLRVLPKCSHVFHIDCIDIWLQNNANCPLCRSSISASTT 203
           E G+R   ECAVCLNEFQEEEKLR++P CSH+FHIDCID+WLQ+NANCPLCR+SIS +T 
Sbjct: 129 EFGERSHCECAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSIS-TTP 187

Query: 204 QPPANQIIPPTSSLQDQTPFTDTIVSGDQDFVVIE 308
           + P +QII P+SS QD +P+ +  + GD+DFVVIE
Sbjct: 188 RFPVHQIIAPSSSPQDPSPYANNYIGGDEDFVVIE 222


>emb|CAN69298.1| hypothetical protein VITISV_043412 [Vitis vinifera]
          Length = 419

 Score =  141 bits (356), Expect = 5e-32
 Identities = 63/95 (66%), Positives = 79/95 (83%)
 Frame = +3

Query: 24  EIGQRDLLECAVCLNEFQEEEKLRVLPKCSHVFHIDCIDIWLQNNANCPLCRSSISASTT 203
           E G+R   ECAVCLNEFQEEEKLR++P CSH+FHIDCID+WLQ+NANCPLCR+SIS +T 
Sbjct: 189 EFGERSHCECAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSIS-TTP 247

Query: 204 QPPANQIIPPTSSLQDQTPFTDTIVSGDQDFVVIE 308
           + P +QII P+SS QD +P+ +  + GD+DFVVIE
Sbjct: 248 RFPVHQIIAPSSSPQDPSPYANNYIGGDEDFVVIE 282


>ref|XP_002314635.1| predicted protein [Populus trichocarpa] gi|222863675|gb|EEF00806.1|
           predicted protein [Populus trichocarpa]
          Length = 340

 Score =  136 bits (342), Expect = 2e-30
 Identities = 60/94 (63%), Positives = 78/94 (82%)
 Frame = +3

Query: 27  IGQRDLLECAVCLNEFQEEEKLRVLPKCSHVFHIDCIDIWLQNNANCPLCRSSISASTTQ 206
           +G+R   ECAVCLNEFQE EKLR +P CSHVFHIDCID+WLQ+NANCPLCR+SIS STT+
Sbjct: 110 VGERSFCECAVCLNEFQEAEKLRRIPNCSHVFHIDCIDVWLQSNANCPLCRTSIS-STTR 168

Query: 207 PPANQIIPPTSSLQDQTPFTDTIVSGDQDFVVIE 308
            P + II P+S+  D  P++++++ GD+D+VVIE
Sbjct: 169 FPIDHIIAPSSTPHDANPYSESVMGGDEDYVVIE 202


>ref|XP_002532367.1| ring finger protein, putative [Ricinus communis]
           gi|223527923|gb|EEF30010.1| ring finger protein,
           putative [Ricinus communis]
          Length = 345

 Score =  131 bits (329), Expect = 6e-29
 Identities = 61/102 (59%), Positives = 79/102 (77%)
 Frame = +3

Query: 3   QFKKTELEIGQRDLLECAVCLNEFQEEEKLRVLPKCSHVFHIDCIDIWLQNNANCPLCRS 182
           Q+++ E +  QR +  C VCLNEFQEE+ LRVLP C+H FH+DCIDIWLQ+NANCPLCR+
Sbjct: 114 QYRRGEAQ--QRSIYGCVVCLNEFQEEDMLRVLPNCNHSFHLDCIDIWLQSNANCPLCRT 171

Query: 183 SISASTTQPPANQIIPPTSSLQDQTPFTDTIVSGDQDFVVIE 308
            IS   T+ P +QII P+SS Q   P+TD+++ GD+DFVVIE
Sbjct: 172 GIS-GITRYPIDQIIAPSSSPQGSQPYTDSLMGGDEDFVVIE 212


Top