BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027133
         (519 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis tha...   268   3e-70
ref|XP_002321582.1| rna-dependent RNA polymerase [Populus tricho...   268   4e-70
ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis ...   267   8e-70
ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   265   2e-69
ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-li...   265   2e-69

>ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
           gi|75318859|sp|O82504.1|RDR2_ARATH RecName:
           Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
           AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
           AltName: Full=RNA-directed RNA polymerase 2
           gi|3600048|gb|AAC35535.1| similar to hypothetical
           proteins in Schizosaccharomyces pombe (GB:Z98533) and C.
           elegans (GB:Z48334 and Z78419) [Arabidopsis thaliana]
           gi|4850292|emb|CAB43048.1| putative RNA-directed RNA
           polymerase [Arabidopsis thaliana]
           gi|7267812|emb|CAB81214.1| putative RNA-directed RNA
           polymerase [Arabidopsis thaliana]
           gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase
           2 [Arabidopsis thaliana]
          Length = 1133

 Score =  268 bits (685), Expect = 3e-70
 Identities = 131/168 (77%), Positives = 145/168 (86%)
 Frame = +3

Query: 3   SVWMFASNDTVKTEDIRKWMGCFKDIPSVSKCAARMGQLFSSSKQTLTVRAQDVANIPDI 182
           SVWMFASN+ VK EDIR+WMGCF+ I S+SKCAARMGQLFS+S+QTL VRAQDV  IPDI
Sbjct: 483 SVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDI 542

Query: 183 EVTTDGIKYCFSDGIGKISLMFAKQVANMCGLSHIPSAFQIRYGGYKGVIAVDRNSFKKL 362
           EVTTDG  YCFSDGIGKISL FAKQVA  CGLSH+PSAFQIRYGGYKGVIAVDR+SF+KL
Sbjct: 543 EVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKL 602

Query: 363 SLRKSMQKFFSKDRMLNITSCAESFPCYLNREIVSLLSTLGIQDEKFE 506
           SLR SM KF S +RMLN+T   ES PC+LNREI+ LLSTLGI+D  FE
Sbjct: 603 SLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFE 650


>ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1110

 Score =  268 bits (684), Expect = 4e-70
 Identities = 133/172 (77%), Positives = 146/172 (84%)
 Frame = +3

Query: 3   SVWMFASNDTVKTEDIRKWMGCFKDIPSVSKCAARMGQLFSSSKQTLTVRAQDVANIPDI 182
           SVWMFASN+ VK EDIRKWMGCF  I SVSKCAARMGQLFSSS QT  V  QDV  IPDI
Sbjct: 470 SVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEIIPDI 529

Query: 183 EVTTDGIKYCFSDGIGKISLMFAKQVANMCGLSHIPSAFQIRYGGYKGVIAVDRNSFKKL 362
           EVTTDGI YCFSDGIGKISL FAKQVA+ CGLSH PSAFQIRYGGYKGV+AVDRNSF+KL
Sbjct: 530 EVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLSHTPSAFQIRYGGYKGVVAVDRNSFRKL 589

Query: 363 SLRKSMQKFFSKDRMLNITSCAESFPCYLNREIVSLLSTLGIQDEKFERSEE 518
           SLR SM KF S++RMLN+T  +ES PCYLNREI+SLLSTLG+ DE F+  ++
Sbjct: 590 SLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQ 641


>ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
           gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase
           2 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  267 bits (682), Expect = 8e-70
 Identities = 129/168 (76%), Positives = 145/168 (86%)
 Frame = +3

Query: 3   SVWMFASNDTVKTEDIRKWMGCFKDIPSVSKCAARMGQLFSSSKQTLTVRAQDVANIPDI 182
           SVWMFASN+ +K EDIR+WMGCF+ I S+SKCAARMGQLFS+S+QTL VRAQDV  IPDI
Sbjct: 484 SVWMFASNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRAQDVEQIPDI 543

Query: 183 EVTTDGIKYCFSDGIGKISLMFAKQVANMCGLSHIPSAFQIRYGGYKGVIAVDRNSFKKL 362
           EVTTDG  YCFSDGIGKISL FAKQVA  CGLSH+PSAFQIRYGGYKGVIAVDR+SF+K+
Sbjct: 544 EVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKM 603

Query: 363 SLRKSMQKFFSKDRMLNITSCAESFPCYLNREIVSLLSTLGIQDEKFE 506
           SLR SM KF S +RMLN+T   ES PC+LNREI+ LLSTLGI+D  FE
Sbjct: 604 SLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFE 651


>ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
          Length = 1117

 Score =  265 bits (678), Expect = 2e-69
 Identities = 127/172 (73%), Positives = 148/172 (86%)
 Frame = +3

Query: 3   SVWMFASNDTVKTEDIRKWMGCFKDIPSVSKCAARMGQLFSSSKQTLTVRAQDVANIPDI 182
           SVWMFAS+D +K E+IR+WMGCF+ I S+SKCAARMGQLFSSS QTL V  +DV  IPDI
Sbjct: 475 SVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDI 534

Query: 183 EVTTDGIKYCFSDGIGKISLMFAKQVANMCGLSHIPSAFQIRYGGYKGVIAVDRNSFKKL 362
           EV TDGI YCFSDGIGKISL FA+QVA+ CG++HIPSAFQIRYGGYKGVIAVDRNSF+KL
Sbjct: 535 EVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKL 594

Query: 363 SLRKSMQKFFSKDRMLNITSCAESFPCYLNREIVSLLSTLGIQDEKFERSEE 518
           SLR SM KF SK++MLN+T C +S PCYLNREI +LLSTLG++DE FE  ++
Sbjct: 595 SLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQ 646


>ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
           gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase
           2 [Cucumis sativus]
          Length = 1117

 Score =  265 bits (678), Expect = 2e-69
 Identities = 127/172 (73%), Positives = 148/172 (86%)
 Frame = +3

Query: 3   SVWMFASNDTVKTEDIRKWMGCFKDIPSVSKCAARMGQLFSSSKQTLTVRAQDVANIPDI 182
           SVWMFAS+D +K E+IR+WMGCF+ I S+SKCAARMGQLFSSS QTL V  +DV  IPDI
Sbjct: 475 SVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDI 534

Query: 183 EVTTDGIKYCFSDGIGKISLMFAKQVANMCGLSHIPSAFQIRYGGYKGVIAVDRNSFKKL 362
           EV TDGI YCFSDGIGKISL FA+QVA+ CG++HIPSAFQIRYGGYKGVIAVDRNSF+KL
Sbjct: 535 EVNTDGIDYCFSDGIGKISLSFARQVADKCGVNHIPSAFQIRYGGYKGVIAVDRNSFRKL 594

Query: 363 SLRKSMQKFFSKDRMLNITSCAESFPCYLNREIVSLLSTLGIQDEKFERSEE 518
           SLR SM KF SK++MLN+T C +S PCYLNREI +LLSTLG++DE FE  ++
Sbjct: 595 SLRDSMLKFESKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQ 646