BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00027085
         (522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...   258   3e-67
emb|CBI24313.3| unnamed protein product [Vitis vinifera]              253   9e-66
ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...   242   2e-62
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ...   216   2e-54
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar...   214   6e-54

>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  258 bits (660), Expect = 3e-67
 Identities = 120/173 (69%), Positives = 142/173 (82%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEGVELDGVVMVSLLLVCNQLKWLRHG 341
           MP+RD VLWTAMLAGYAQH EP+L+L V++QMV  GV LDGVVM+SLLL C QL WL+HG
Sbjct: 171 MPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHG 230

Query: 340 KSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGLD 161
           KSVHGW  RRC+ L L+LGNALV  YVKC+ALG  Y +F  MPERDVISWS++I+GYGL 
Sbjct: 231 KSVHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLS 290

Query: 160 GNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFGTMKDYGV 2
           GNV +AL+LF++M + G+KPNDVTFLG LSAC H GMV+RA  YF  MK+YGV
Sbjct: 291 GNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMKEYGV 343



 Score = 82.4 bits (202), Expect = 4e-14
 Identities = 47/166 (28%), Positives = 79/166 (47%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEGVELDGVVMVSLLLVCNQLKWLRHG 341
           MP R+   W  ++  +++   P  S++++ QM       D   +  +L  C     ++ G
Sbjct: 70  MPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLG 129

Query: 340 KSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGLD 161
            SVHG CV   +   L + +ALV MYV    +     +F  MPERD + W+A++ GY   
Sbjct: 130 VSVHGLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYAQH 189

Query: 160 GNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFG 23
               +AL +F QM   G+  + V  + +L AC   G +   ++  G
Sbjct: 190 EEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHGKSVHG 235


>emb|CBI24313.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  253 bits (647), Expect = 9e-66
 Identities = 118/171 (69%), Positives = 140/171 (81%)
 Frame = -3

Query: 514 QRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEGVELDGVVMVSLLLVCNQLKWLRHGKS 335
           +RD VLWTAMLAGYAQH EP+L+L V++QMV  GV LDGVVM+SLLL C QL WL+HGKS
Sbjct: 125 KRDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHGKS 184

Query: 334 VHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGLDGN 155
           VHGW  RRC+ L L+LGNALV  YVKC+ALG  Y +F  MPERDVISWS++I+GYGL GN
Sbjct: 185 VHGWITRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYGLSGN 244

Query: 154 VSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFGTMKDYGV 2
           V +AL+LF++M + G+KPNDVTFLG LSAC H GMV+RA  YF  MK+YGV
Sbjct: 245 VDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMKEYGV 295


>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score =  242 bits (618), Expect = 2e-62
 Identities = 118/175 (67%), Positives = 143/175 (81%), Gaps = 2/175 (1%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEG--VELDGVVMVSLLLVCNQLKWLR 347
           M +RD VLWTA+L+GYAQ+GEP L L+V+++MV     V+LD VVMVSLLLVC QL  L+
Sbjct: 198 MAKRDSVLWTALLSGYAQNGEPKLGLQVFREMVDNSTRVKLDWVVMVSLLLVCGQLGSLK 257

Query: 346 HGKSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYG 167
           HGKSVHGWCVR C+RLELSLGNA+V MY+KC  L   +R F  MPERDV SWS+LI+GYG
Sbjct: 258 HGKSVHGWCVRNCLRLELSLGNAIVHMYIKCGMLAYAHRFFDKMPERDVFSWSSLILGYG 317

Query: 166 LDGNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFGTMKDYGV 2
           L GNVSVAL LF+QM M GIKPNDVTFLG+LSAC H G+V++AR+YF  M++YG+
Sbjct: 318 LSGNVSVALCLFDQMHMRGIKPNDVTFLGILSACGHGGLVEQARSYFKMMQNYGL 372



 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEG-VELDGVVMVSLLLVCNQLKWLRH 344
           MP ++   W  ++  +A+   P  S++++  M  +   + D   +  +L  C      + 
Sbjct: 96  MPCKNIYSWNIIIGEFARSNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKL 155

Query: 343 GKSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGL 164
           G SVHG CV+  + + L +G+ALV MYV    + +   VF  M +RD + W+AL+ GY  
Sbjct: 156 GSSVHGLCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVFDEMAKRDSVLWTALLSGYAQ 215

Query: 163 DGNVSVALELFEQMC--MVGIKPNDVTFLGVLSACAHAGMVDRARAYFG 23
           +G   + L++F +M      +K + V  + +L  C   G +   ++  G
Sbjct: 216 NGEPKLGLQVFREMVDNSTRVKLDWVVMVSLLLVCGQLGSLKHGKSVHG 264


>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314142|gb|EFH44565.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 458

 Score =  216 bits (550), Expect = 2e-54
 Identities = 103/173 (59%), Positives = 130/173 (75%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEGVELDGVVMVSLLLVCNQLKWLRHG 341
           MP RD VL+TAM  GY Q GE LL L V+++M   G  LD VVMVSLL+ C QL  L+HG
Sbjct: 176 MPVRDSVLYTAMFGGYVQQGEALLGLAVFREMRYSGFLLDSVVMVSLLMACGQLGALKHG 235

Query: 340 KSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGLD 161
           KSVHGWC+RRC    L+LGNA+ DMYVKCS L   + VF+ MP RDVISWS+LI+GYGLD
Sbjct: 236 KSVHGWCIRRCSCFGLNLGNAITDMYVKCSILDYAHTVFVNMPRRDVISWSSLILGYGLD 295

Query: 160 GNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFGTMKDYGV 2
           G+V V+++LF++M   GI+PN VTFLGVLSACAH G+V+++  Y   M++Y +
Sbjct: 296 GDVVVSIKLFDEMLQEGIEPNAVTFLGVLSACAHGGLVEKSWLYLRLMQEYKI 348



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEG-VELDGVVMVSLLLVCNQLKWLRH 344
           MP R+   W  ++  +++ G   +S+ ++ +M  E  V  D   +  +L  C+  +  + 
Sbjct: 74  MPCRNIFSWNIIIGEFSRSGFASISIGMFLRMWRESNVRPDDFTLPLVLRACSASREAKF 133

Query: 343 GKSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGL 164
           G  +H  C++      L + +ALV MYV    +    ++F  MP RD + ++A+  GY  
Sbjct: 134 GDLIHVLCLKLGFNASLFVRSALVIMYVDLGEILHARKLFDDMPVRDSVLYTAMFGGYVQ 193

Query: 163 DGNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFG 23
            G   + L +F +M   G   + V  + +L AC   G +   ++  G
Sbjct: 194 QGEALLGLAVFREMRYSGFLLDSVVMVSLLMACGQLGALKHGKSVHG 240


>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  214 bits (545), Expect = 6e-54
 Identities = 101/173 (58%), Positives = 130/173 (75%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEGVELDGVVMVSLLLVCNQLKWLRHG 341
           MP RD VL+TAM  GY Q GE +L L ++++M   G  LD VVMVSLL+ C QL  L+HG
Sbjct: 195 MPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHG 254

Query: 340 KSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGLD 161
           KSVHGWC+RRC  L L+LGNA+ DMYVKCS L   + VF+ M  RDVISWS+LI+GYGLD
Sbjct: 255 KSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLD 314

Query: 160 GNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFGTMKDYGV 2
           G+V ++ +LF++M   GI+PN VTFLGVLSACAH G+V+++  YF  M++Y +
Sbjct: 315 GDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLMQEYNI 367



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 1/167 (0%)
 Frame = -3

Query: 520 MPQRDYVLWTAMLAGYAQHGEPLLSLEVYKQMVGEG-VELDGVVMVSLLLVCNQLKWLRH 344
           MP R+   W  ++  +++ G    S++++ +M  E  V  D   +  +L  C+  +  + 
Sbjct: 93  MPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILRACSASREAKS 152

Query: 343 GKSVHGWCVRRCVRLELSLGNALVDMYVKCSALGSGYRVFITMPERDVISWSALIVGYGL 164
           G  +H  C++      L + +ALV MYV    L    ++F  MP RD + ++A+  GY  
Sbjct: 153 GDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYVQ 212

Query: 163 DGNVSVALELFEQMCMVGIKPNDVTFLGVLSACAHAGMVDRARAYFG 23
            G   + L +F +M   G   + V  + +L AC   G +   ++  G
Sbjct: 213 QGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHG 259