BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026893
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|2...   131   5e-29
ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula] gi|3...   130   1e-28
ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana] gi...   127   7e-28
ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arab...   127   1e-27
ref|XP_001785482.1| predicted protein [Physcomitrella patens sub...   126   2e-27

>ref|XP_002307047.1| predicted protein [Populus trichocarpa] gi|222856496|gb|EEE94043.1|
           predicted protein [Populus trichocarpa]
          Length = 910

 Score =  131 bits (330), Expect = 5e-29
 Identities = 60/81 (74%), Positives = 70/81 (86%)
 Frame = -1

Query: 246 IRVLNVAEKPSVAKTVSTILSRNQCNSRQAHSRYNRVFEFEYSIRGQPCHMLVTSVLGHL 67
           I+VLNVAEKPSVAK+V+TILSRNQ   R   SRYN++FEF YSI GQ CHMLVTSV GHL
Sbjct: 2   IKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGHL 61

Query: 66  MELDFEEQYRKWHSCDPAALY 4
           ME++FE+++RKWHSCDPA LY
Sbjct: 62  MEVEFEDRFRKWHSCDPADLY 82


>ref|XP_003602653.1| DNA topoisomerase [Medicago truncatula] gi|355491701|gb|AES72904.1|
           DNA topoisomerase [Medicago truncatula]
          Length = 587

 Score =  130 bits (326), Expect = 1e-28
 Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
 Frame = -1

Query: 252 RPIRVLNVAEKPSVAKTVSTILSRNQ-CNSRQAHSRYNRVFEFEYSIRGQPCHMLVTSVL 76
           R I VLNVAEKPSVAK+V++ILSRNQ    R   SRYNR+FEF Y+IRGQPC ML TSVL
Sbjct: 4   RAITVLNVAEKPSVAKSVASILSRNQGLRVRDGRSRYNRIFEFNYTIRGQPCQMLFTSVL 63

Query: 75  GHLMELDFEEQYRKWHSCDPAALYE 1
           GHLMELDF+++YRKWHSCDPA L++
Sbjct: 64  GHLMELDFDDRYRKWHSCDPADLFQ 88


>ref|NP_201197.1| DNA topoisomerase III [Arabidopsis thaliana]
           gi|8777305|dbj|BAA96895.1| DNA topoisomerase III
           [Arabidopsis thaliana] gi|169218912|gb|ACA50279.1|
           topoisomerase 3 alpha [Arabidopsis thaliana]
           gi|332010433|gb|AED97816.1| DNA topoisomerase III
           [Arabidopsis thaliana]
          Length = 926

 Score =  127 bits (320), Expect = 7e-28
 Identities = 56/83 (67%), Positives = 71/83 (85%)
 Frame = -1

Query: 249 PIRVLNVAEKPSVAKTVSTILSRNQCNSRQAHSRYNRVFEFEYSIRGQPCHMLVTSVLGH 70
           P+ VLNVAEKPSVAK+V+ ILSR    +R+  SRYN++FEF+Y+I GQPC ML+TSV+GH
Sbjct: 8   PVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGH 67

Query: 69  LMELDFEEQYRKWHSCDPAALYE 1
           LMEL+F ++YRKWHSCDPA LY+
Sbjct: 68  LMELEFADRYRKWHSCDPADLYQ 90


>ref|XP_002864876.1| hypothetical protein ARALYDRAFT_496584 [Arabidopsis lyrata subsp.
           lyrata] gi|297310711|gb|EFH41135.1| hypothetical protein
           ARALYDRAFT_496584 [Arabidopsis lyrata subsp. lyrata]
          Length = 923

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/83 (67%), Positives = 70/83 (84%)
 Frame = -1

Query: 249 PIRVLNVAEKPSVAKTVSTILSRNQCNSRQAHSRYNRVFEFEYSIRGQPCHMLVTSVLGH 70
           P+ VLNVAEKPSVAK+V+ ILSR    +R+  SRYN++FEF+Y+I GQPC ML+TSV+GH
Sbjct: 8   PVTVLNVAEKPSVAKSVAGILSRGTFRTREGRSRYNKIFEFDYAINGQPCRMLMTSVIGH 67

Query: 69  LMELDFEEQYRKWHSCDPAALYE 1
           LMEL+F  +YRKWHSCDPA LY+
Sbjct: 68  LMELEFANRYRKWHSCDPADLYQ 90


>ref|XP_001785482.1| predicted protein [Physcomitrella patens subsp. patens]
           gi|162662889|gb|EDQ49689.1| predicted protein
           [Physcomitrella patens subsp. patens]
          Length = 915

 Score =  126 bits (316), Expect = 2e-27
 Identities = 58/86 (67%), Positives = 70/86 (81%)
 Frame = -1

Query: 258 MSRPIRVLNVAEKPSVAKTVSTILSRNQCNSRQAHSRYNRVFEFEYSIRGQPCHMLVTSV 79
           M+RPIRVLNVAEKPSVAK+V+ ILSR    +R   S YN++FEF Y+I GQ C ML+TSV
Sbjct: 1   MARPIRVLNVAEKPSVAKSVAVILSRGNVRTRNGRSVYNKIFEFGYTIGGQQCDMLMTSV 60

Query: 78  LGHLMELDFEEQYRKWHSCDPAALYE 1
            GHLMELDFE+Q+RKWHSCDP  L++
Sbjct: 61  TGHLMELDFEDQFRKWHSCDPVDLFQ 86