BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026614
         (301 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80763.1| hypothetical protein VITISV_017069 [Vitis vinifera]    55   4e-08
emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis...    62   5e-08
gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hop...    62   6e-08
dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...    60   2e-07
gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsi...    59   5e-07

>emb|CAN80763.1| hypothetical protein VITISV_017069 [Vitis vinifera]
          Length = 1127

 Score = 55.1 bits (131), Expect(2) = 4e-08
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = +3

Query: 141 GHRYYVTSIDDYTRCTWVYLLRKKFEVLPLFTQVLQLVKT*FNVVVRGIRYEN 299
           G RY+VT +DD+++ TW+Y ++ +FEV   F      +KT FN+ VR +R +N
Sbjct: 460 GFRYFVTFVDDFSQTTWIYFMKNRFEVFSHFCAFCAKIKTQFNIFVRTLRSDN 512



 Score = 26.9 bits (58), Expect(2) = 4e-08
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 37  KHITNKYIPRMHK-SPCVFDLIFSYV*GPFPVT 132
           KH  +   PR++K +  +F+L+ S V GP PVT
Sbjct: 424 KHHRSSLSPRVNKRAESIFELVHSDVWGPCPVT 456


>emb|CAB10225.1| retrovirus-related like polyprotein [Arabidopsis thaliana]
           gi|7268152|emb|CAB78488.1| retrovirus-related like
           polyprotein [Arabidopsis thaliana]
          Length = 1489

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/61 (45%), Positives = 40/61 (65%)
 Frame = +3

Query: 117 PFSCYGFFGHRYYVTSIDDYTRCTWVYLLRKKFEVLPLFTQVLQLVKT*FNVVVRGIRYE 296
           PFS     G RY++T +DD TR TWVY+LR K +V  +F + ++LV T FN  ++ IR +
Sbjct: 643 PFSIESIEGFRYFLTVVDDCTRTTWVYMLRNKKDVSSVFPEFIKLVSTQFNAKIKAIRSD 702

Query: 297 N 299
           N
Sbjct: 703 N 703


>gb|AAB61111.1| Strong similarity to Zea mays retrotransposon Hopscotch polyprotein
           (gb|U12626) [Arabidopsis thaliana]
          Length = 1315

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 26/61 (42%), Positives = 40/61 (65%)
 Frame = +3

Query: 117 PFSCYGFFGHRYYVTSIDDYTRCTWVYLLRKKFEVLPLFTQVLQLVKT*FNVVVRGIRYE 296
           PFS     G+RY++T +DDY+R TWVYLLR K +VL +    + +V+  F   ++G+R +
Sbjct: 473 PFSVQTHDGYRYFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSD 532

Query: 297 N 299
           N
Sbjct: 533 N 533


>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 43/61 (70%)
 Frame = +3

Query: 117 PFSCYGFFGHRYYVTSIDDYTRCTWVYLLRKKFEVLPLFTQVLQLVKT*FNVVVRGIRYE 296
           PF+     G++Y++T +DDY+R TWVYL++ K +VL +F   L++V+T +  +V+ +R +
Sbjct: 652 PFATPTTEGYKYFLTIVDDYSRATWVYLMKAKNDVLQIFPDFLKMVETQYGTLVKAVRSD 711

Query: 297 N 299
           N
Sbjct: 712 N 712


>gb|AAD41979.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1264

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/61 (40%), Positives = 41/61 (67%)
 Frame = +3

Query: 117 PFSCYGFFGHRYYVTSIDDYTRCTWVYLLRKKFEVLPLFTQVLQLVKT*FNVVVRGIRYE 296
           PFS     G++Y++T +DD++R TW+YLL+ K EVL +F   +Q V+  + V V+ +R +
Sbjct: 483 PFSVETVDGYQYFLTIVDDHSRATWIYLLKTKSEVLTIFHDFIQQVENQYKVKVKAVRSD 542

Query: 297 N 299
           N
Sbjct: 543 N 543