BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00026597
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   208   3e-52
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   208   3e-52
ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   204   6e-51
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   203   1e-50
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   202   2e-50

>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  208 bits (530), Expect = 3e-52
 Identities = 104/135 (77%), Positives = 115/135 (85%)
 Frame = -1

Query: 406 RYAGYKGVVAVHPKSVTKLALRYSMRKYTSHNTKLDVLSWSKFQPCFLNRQLITLLSTLG 227
           RY GYKGVVAV P S  KL+LR SM KY S NT LDVLSWSK++PCFLNRQLITLLSTLG
Sbjct: 556 RYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLG 615

Query: 226 VEDDIFEKKQREVVNQLDTILTDPQRALEALGIMSSGENINVLREMLMCGYKPDTEPYLS 47
           V+D +FEKKQRE V+QLDTIL DP RA EAL +MS GEN N+L+EMLMCGYKPD EP+LS
Sbjct: 616 VKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLS 675

Query: 46  MMLQTFRKSKLLELR 2
           MMLQTFR +KLLELR
Sbjct: 676 MMLQTFRAAKLLELR 690


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  208 bits (530), Expect = 3e-52
 Identities = 104/135 (77%), Positives = 115/135 (85%)
 Frame = -1

Query: 406 RYAGYKGVVAVHPKSVTKLALRYSMRKYTSHNTKLDVLSWSKFQPCFLNRQLITLLSTLG 227
           RY GYKGVVAV P S  KL+LR SM KY S NT LDVLSWSK++PCFLNRQLITLLSTLG
Sbjct: 100 RYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLG 159

Query: 226 VEDDIFEKKQREVVNQLDTILTDPQRALEALGIMSSGENINVLREMLMCGYKPDTEPYLS 47
           V+D +FEKKQRE V+QLDTIL DP RA EAL +MS GEN N+L+EMLMCGYKPD EP+LS
Sbjct: 160 VKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLS 219

Query: 46  MMLQTFRKSKLLELR 2
           MMLQTFR +KLLELR
Sbjct: 220 MMLQTFRAAKLLELR 234


>ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1107

 Score =  204 bits (519), Expect = 6e-51
 Identities = 98/135 (72%), Positives = 115/135 (85%)
 Frame = -1

Query: 406 RYAGYKGVVAVHPKSVTKLALRYSMRKYTSHNTKLDVLSWSKFQPCFLNRQLITLLSTLG 227
           RY GYKGVVAV P S  KL+LR SM K+ S NTKLDVL+WSK+QPC++NRQLITLLSTLG
Sbjct: 567 RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 626

Query: 226 VEDDIFEKKQREVVNQLDTILTDPQRALEALGIMSSGENINVLREMLMCGYKPDTEPYLS 47
           VED +FEKKQREVV++LD ILTDP  A EALG+M+ GEN N+L+ +++CGYKPD EP+LS
Sbjct: 627 VEDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 686

Query: 46  MMLQTFRKSKLLELR 2
           MMLQ FR SKLLELR
Sbjct: 687 MMLQNFRASKLLELR 701


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  203 bits (516), Expect = 1e-50
 Identities = 102/135 (75%), Positives = 117/135 (86%)
 Frame = -1

Query: 406 RYAGYKGVVAVHPKSVTKLALRYSMRKYTSHNTKLDVLSWSKFQPCFLNRQLITLLSTLG 227
           RY GYKGVVAV PKS  KL+LR SMRKY S NTKLDVL+ SKFQPC+LNRQLI+LLSTLG
Sbjct: 569 RYGGYKGVVAVDPKSCYKLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLG 628

Query: 226 VEDDIFEKKQREVVNQLDTILTDPQRALEALGIMSSGENINVLREMLMCGYKPDTEPYLS 47
           ++DD+FEKKQRE VNQL+TILTD  +A E L +MS+GE  NVL+EML+CGYKP+ EP+LS
Sbjct: 629 IKDDVFEKKQRETVNQLNTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLS 688

Query: 46  MMLQTFRKSKLLELR 2
           MMLQTFR SKLLELR
Sbjct: 689 MMLQTFRASKLLELR 703


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  202 bits (514), Expect = 2e-50
 Identities = 96/135 (71%), Positives = 115/135 (85%)
 Frame = -1

Query: 406 RYAGYKGVVAVHPKSVTKLALRYSMRKYTSHNTKLDVLSWSKFQPCFLNRQLITLLSTLG 227
           RY GYKGVVAV P S  KL+LR SM K+ S NTKLDVL+WSK+QPC++NRQLITLLSTLG
Sbjct: 557 RYGGYKGVVAVDPNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLG 616

Query: 226 VEDDIFEKKQREVVNQLDTILTDPQRALEALGIMSSGENINVLREMLMCGYKPDTEPYLS 47
           ++D +FEKKQREVV++LD ILTDP  A EALG+M+ GEN N+L+ +++CGYKPD EP+LS
Sbjct: 617 IKDSVFEKKQREVVDRLDAILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLS 676

Query: 46  MMLQTFRKSKLLELR 2
           MMLQ FR SKLLELR
Sbjct: 677 MMLQNFRASKLLELR 691