BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025783
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containi...   263   8e-69
emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]   263   8e-69
ref|XP_002884468.1| pentatricopeptide repeat-containing protein ...   244   5e-63
ref|NP_566237.1| pentatricopeptide repeat-containing protein [Ar...   244   7e-63
ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containi...   243   1e-62

>ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  263 bits (673), Expect = 8e-69
 Identities = 122/164 (74%), Positives = 144/164 (87%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PDMYTYNAIIRG+CKE M+++A E +TSL S GC PDV+SYNILLRAFLN+G+W +GE+L
Sbjct: 240 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKL 299

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           VAEM SRGCEPN VTYS LISSLC  G++++A+ VLKVM+E+ LTPD YSYDPLI+A CK
Sbjct: 300 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 359

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGRLDLAI  +DYM+SNGC PDIVNYNTIL ALCK+G+ANQALE
Sbjct: 360 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403



 Score =  125 bits (313), Expect = 5e-27
 Identities = 55/157 (35%), Positives = 96/157 (61%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD++ YNA+I G CK   I+ A + L  + + G  PD+V+YNI++ +  NR +     ++
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +++   C P V+TY+ LI +   +G + +A+ +L+ M+ RGL PD+Y+Y+ +I   CK
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSG 472
           EG ++ A   +  + S GC PD+++YN +L A    G
Sbjct: 255 EGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQG 291



 Score =  117 bits (293), Expect = 1e-24
 Identities = 57/163 (34%), Positives = 93/163 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD Y+Y+ +I  LCKE  +D A   +  + S GC PD+V+YN +L A    G       +
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
             ++   GC PNV +Y+T+IS+L   G    A+ ++  M+ +G+ PD  +Y+ LI+  C+
Sbjct: 405 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCR 464

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQAL 490
           +G ++ AI  LD M  +G  P +++YN +L  LCK    + A+
Sbjct: 465 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 507



 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/164 (34%), Positives = 90/164 (54%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+  YN I+  LCK    ++A E    L   GC P+V SYN ++ A  + G       +
Sbjct: 380 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 439

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           V  M+S+G +P+ +TY++LIS LC DG VE+A+ +L  M + G  P + SY+ ++   CK
Sbjct: 440 VPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 499

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
             R+D AI     M+  GC P+   Y  ++  +  +G   +A+E
Sbjct: 500 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAME 543



 Score =  103 bits (257), Expect = 1e-20
 Identities = 49/163 (30%), Positives = 87/163 (53%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           P+  TY+ +I  LC+   ID+A   L  +      PD  SY+ L+ A    GR      +
Sbjct: 310 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 369

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M+S GC P++V Y+T++++LC +G    A+++   +   G  P++ SY+ +I+A   
Sbjct: 370 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 429

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQAL 490
            G    A+  +  M+S G  PD + YN+++  LC+ G   +A+
Sbjct: 430 CGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472



 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 47/151 (31%), Positives = 78/151 (51%)
 Frame = +2

Query: 41  CKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERLVAEMVSRGCEPNV 220
           CK    +++  FL  L + G  PDV+    L++ F N    +   R V E++    EP+V
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASR-VMEILESHTEPDV 137

Query: 221 VTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDY 400
             Y+ +IS  C   ++E A  VL  M  RG  PDI +Y+ +I + C   +L LA+  LD 
Sbjct: 138 FAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQ 197

Query: 401 MVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           ++ + C P ++ Y  ++ A    G  N+A++
Sbjct: 198 LLLDNCMPTVITYTILIEATIVEGGINEAMK 228



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 58/112 (51%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD  TYN++I  LC++ ++++A   L  +   G  P V+SYNI+L       R  D   +
Sbjct: 450 PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 509

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYD 337
            AEM+ +GC PN  TY  LI  +   G   +A+++   +  R    D+ S D
Sbjct: 510 FAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSR----DVISQD 557


>emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  263 bits (673), Expect = 8e-69
 Identities = 122/164 (74%), Positives = 144/164 (87%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PDMYTYNAIIRG+CKE M+++A E +TSL S GC PDV+SYNILLRAFLN+G+W +GE+L
Sbjct: 250 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKL 309

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           VAEM SRGCEPN VTYS LISSLC  G++++A+ VLKVM+E+ LTPD YSYDPLI+A CK
Sbjct: 310 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCK 369

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGRLDLAI  +DYM+SNGC PDIVNYNTIL ALCK+G+ANQALE
Sbjct: 370 EGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413



 Score =  124 bits (311), Expect = 8e-27
 Identities = 55/157 (35%), Positives = 95/157 (60%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD++ YNA+I G CK   I+ A + L  + + G  PD+V+YNI++ +  NR +      +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +++   C P V+TY+ LI +   +G + +A+ +L+ M+ RGL PD+Y+Y+ +I   CK
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSG 472
           EG ++ A   +  + S GC PD+++YN +L A    G
Sbjct: 265 EGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQG 301



 Score =  117 bits (294), Expect = 7e-25
 Identities = 57/163 (34%), Positives = 93/163 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD Y+Y+ +I  LCKE  +D A   +  + S GC PD+V+YN +L A    G       +
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
             ++   GC PNV +Y+T+IS+L   G    A+ ++  M+ +G+ PD  +Y+ LI+  C+
Sbjct: 415 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCR 474

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQAL 490
           +G ++ AI  LD M  +G  P +++YN +L  LCK    + A+
Sbjct: 475 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAI 517



 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/164 (34%), Positives = 90/164 (54%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+  YN I+  LCK    ++A E    L   GC P+V SYN ++ A  + G       +
Sbjct: 390 PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGM 449

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           V  M+S+G +P+ +TY++LIS LC DG VE+A+ +L  M + G  P + SY+ ++   CK
Sbjct: 450 VPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCK 509

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
             R+D AI     M+  GC P+   Y  ++  +  +G   +A+E
Sbjct: 510 VRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAME 553



 Score =  103 bits (257), Expect = 1e-20
 Identities = 49/163 (30%), Positives = 87/163 (53%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           P+  TY+ +I  LC+   ID+A   L  +      PD  SY+ L+ A    GR      +
Sbjct: 320 PNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGI 379

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M+S GC P++V Y+T++++LC +G    A+++   +   G  P++ SY+ +I+A   
Sbjct: 380 MDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWS 439

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQAL 490
            G    A+  +  M+S G  PD + YN+++  LC+ G   +A+
Sbjct: 440 CGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482



 Score = 89.7 bits (221), Expect = 2e-16
 Identities = 47/151 (31%), Positives = 78/151 (51%)
 Frame = +2

Query: 41  CKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERLVAEMVSRGCEPNV 220
           CK    +++  FL  L + G  PDV+    L++ F N    +   R V E++    EP+V
Sbjct: 89  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASR-VMEILESHTEPDV 147

Query: 221 VTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDY 400
             Y+ +IS  C   ++E A  VL  M  RG  PDI +Y+ +I + C   +L LA+  LD 
Sbjct: 148 FAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQ 207

Query: 401 MVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           ++ + C P ++ Y  ++ A    G  N+A++
Sbjct: 208 LLLDNCMPTVITYTILIEATIVEGGINEAMK 238



 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 37/112 (33%), Positives = 58/112 (51%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD  TYN++I  LC++ ++++A   L  +   G  P V+SYNI+L       R  D   +
Sbjct: 460 PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 519

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYD 337
            AEM+ +GC PN  TY  LI  +   G   +A+++   +  R    D+ S D
Sbjct: 520 FAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFSR----DVISQD 567


>ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330308|gb|EFH60727.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 598

 Score =  244 bits (623), Expect = 5e-63
 Identities = 108/164 (65%), Positives = 140/164 (85%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PDM+TYN IIRG+CKE M+D+AFE + +L   GC PDV+SYNILLRA LN+G+W++GE+L
Sbjct: 257 PDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 316

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +M S  C+PNVVTYS LI++LC DGK+E+A+++LK+M E+GLTPD YSYDPLI AFC+
Sbjct: 317 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 376

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGRLD+AI FL+ M+S+GC PDIVNYNT+L  LCK+G A+QALE
Sbjct: 377 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 420



 Score =  129 bits (323), Expect = 3e-28
 Identities = 58/157 (36%), Positives = 96/157 (61%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD++ YNA+I G CK   ID A   L  + S    PD V+YNI++ +  +RG+     ++
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +++S  C+P V+TY+ LI +   +G V++A+ +L  M+ RGL PD+++Y+ +I   CK
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCK 271

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSG 472
           EG +D A   +  +   GC PD+++YN +L AL   G
Sbjct: 272 EGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQG 308



 Score =  115 bits (288), Expect = 4e-24
 Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 35/199 (17%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGR------- 160
           PD Y+Y+ +I   C+E  +D A EFL ++ S GC PD+V+YN +L      G+       
Sbjct: 362 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 421

Query: 161 -----------------------WKDGERL-----VAEMVSRGCEPNVVTYSTLISSLCH 256
                                  W  G+++     + EMVS G +P+ +TY+++IS LC 
Sbjct: 422 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCR 481

Query: 257 DGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDYMVSNGCTPDIVN 436
           +G V+ A ++L  M      P + +Y+ ++  FCK  R++ AI+ LD MV NGC P+   
Sbjct: 482 EGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETT 541

Query: 437 YNTILGALCKSGSANQALE 493
           Y  ++  +  +G   +A+E
Sbjct: 542 YTVLIEGIGFAGYRAEAME 560



 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/164 (32%), Positives = 95/164 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           P++ TY+ +I  LC++  I++A   L  +   G  PD  SY+ L+ AF   GR       
Sbjct: 327 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 386

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M+S GC P++V Y+T++++LC +GK + A+++   + E G +P+  SY+ + +A   
Sbjct: 387 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 446

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
            G    A++ +  MVSNG  PD + YN+++  LC+ G  ++A E
Sbjct: 447 SGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFE 490



 Score =  105 bits (263), Expect = 3e-21
 Identities = 59/164 (35%), Positives = 87/164 (53%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+     +I+G    R + KA   +  L   G  PDV +YN L+  F    R  D  R+
Sbjct: 118 PDVILCTKLIKGFFTLRNVPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRV 176

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M S+   P+ VTY+ +I SLC  GK++ A+ VL  ++     P + +Y  LI A   
Sbjct: 177 LDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATML 236

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EG +D A+  LD M+S G  PD+  YNTI+  +CK G  ++A E
Sbjct: 237 EGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 280



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 39/95 (41%), Positives = 55/95 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD  TYN++I  LC+E M+DKAFE L  + S    P VV+YNI+L  F    R +D   +
Sbjct: 467 PDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDV 526

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDV 286
           +  MV  GC PN  TY+ LI  +   G   +A+++
Sbjct: 527 LDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561


>ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
           gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical
           protein [Arabidopsis thaliana]
           gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis
           thaliana] gi|22136960|gb|AAM91709.1| unknown protein
           [Arabidopsis thaliana] gi|332640611|gb|AEE74132.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 602

 Score =  244 bits (622), Expect = 7e-63
 Identities = 108/164 (65%), Positives = 140/164 (85%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PDM+TYN IIRG+CKE M+D+AFE + +L   GC PDV+SYNILLRA LN+G+W++GE+L
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +M S  C+PNVVTYS LI++LC DGK+E+A+++LK+M E+GLTPD YSYDPLI AFC+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGRLD+AI FL+ M+S+GC PDIVNYNT+L  LCK+G A+QALE
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALE 424



 Score =  127 bits (320), Expect = 7e-28
 Identities = 57/157 (36%), Positives = 96/157 (61%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD++ YNA+I G CK   ID A   L  + S    PD V+YNI++ +  +RG+     ++
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +++S  C+P V+TY+ LI +   +G V++A+ ++  M+ RGL PD+++Y+ +I   CK
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSG 472
           EG +D A   +  +   GC PD+++YN +L AL   G
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQG 312



 Score =  115 bits (289), Expect = 3e-24
 Identities = 60/199 (30%), Positives = 102/199 (51%), Gaps = 35/199 (17%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGR------- 160
           PD Y+Y+ +I   C+E  +D A EFL ++ S GC PD+V+YN +L      G+       
Sbjct: 366 PDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEI 425

Query: 161 -----------------------WKDGERL-----VAEMVSRGCEPNVVTYSTLISSLCH 256
                                  W  G+++     + EM+S G +P+ +TY+++IS LC 
Sbjct: 426 FGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485

Query: 257 DGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDYMVSNGCTPDIVN 436
           +G V++A ++L  M      P + +Y+ ++  FCK  R++ AIN L+ MV NGC P+   
Sbjct: 486 EGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETT 545

Query: 437 YNTILGALCKSGSANQALE 493
           Y  ++  +  +G   +A+E
Sbjct: 546 YTVLIEGIGFAGYRAEAME 564



 Score =  114 bits (284), Expect = 1e-23
 Identities = 53/164 (32%), Positives = 95/164 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           P++ TY+ +I  LC++  I++A   L  +   G  PD  SY+ L+ AF   GR       
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M+S GC P++V Y+T++++LC +GK + A+++   + E G +P+  SY+ + +A   
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWS 450

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
            G    A++ +  M+SNG  PD + YN+++  LC+ G  ++A E
Sbjct: 451 SGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFE 494



 Score =  105 bits (263), Expect = 3e-21
 Identities = 59/164 (35%), Positives = 87/164 (53%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+     +I+G    R I KA   +  L   G  PDV +YN L+  F    R  D  R+
Sbjct: 122 PDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRV 180

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           +  M S+   P+ VTY+ +I SLC  GK++ A+ VL  ++     P + +Y  LI A   
Sbjct: 181 LDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATML 240

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EG +D A+  +D M+S G  PD+  YNTI+  +CK G  ++A E
Sbjct: 241 EGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 38/95 (40%), Positives = 55/95 (57%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD  TYN++I  LC+E M+D+AFE L  + S    P VV+YNI+L  F    R +D   +
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDV 286
           +  MV  GC PN  TY+ LI  +   G   +A+++
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565


>ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  243 bits (620), Expect = 1e-62
 Identities = 114/164 (69%), Positives = 138/164 (84%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+YTYNAIIRG+CKE M D+A +F+  L + GC PDVVSYNILLR+FLN+ RW+DGERL
Sbjct: 234 PDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERL 293

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +MV  GCEPNVVT+S LISS C +G+V +AV+VL+VM E+GLTPD YSYDPLI+AFCK
Sbjct: 294 MKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCK 353

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGRLDLAI +L+ MVS+GC PDIVNYNTIL  LCK G A+ AL+
Sbjct: 354 EGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALD 397



 Score =  133 bits (334), Expect = 2e-29
 Identities = 57/150 (38%), Positives = 100/150 (66%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+Y+YNA+I G  K   ID A +    + S G  PDVV+YNI++ +  +RG+ +    +
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + E++  GC+P+V+TY+ LI +   +G++ +A+++   ++ RGL PD+Y+Y+ +I   CK
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTIL 451
           EG  D A++F+ ++ + GC PD+V+YN +L
Sbjct: 249 EGMEDRALDFVRHLSARGCNPDVVSYNILL 278



 Score =  109 bits (273), Expect = 2e-22
 Identities = 58/164 (35%), Positives = 90/164 (54%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD+     +I+G    R + KA   +  L + G  PDV SYN ++  F    +     ++
Sbjct: 95  PDVVLCTKLIKGFFNSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQV 153

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
              M SRG  P+VVTY+ +I SLC  GK+E A +V+  +++ G  P + +Y  LI A   
Sbjct: 154 FDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATIL 213

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQALE 493
           EGR++ A+   D +VS G  PD+  YN I+  +CK G  ++AL+
Sbjct: 214 EGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALD 257



 Score =  102 bits (253), Expect = 4e-20
 Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 35/199 (17%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRG-------- 157
           PD Y+Y+ +I   CKE  +D A E+L  + S GC PD+V+YN +L      G        
Sbjct: 339 PDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDV 398

Query: 158 ----------------------RWKDGERL-----VAEMVSRGCEPNVVTYSTLISSLCH 256
                                  W  G ++     ++EM+ +G +P+ +TY++LIS LC 
Sbjct: 399 FEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCR 458

Query: 257 DGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDYMVSNGCTPDIVN 436
           DG V++A+ +L  M      P + S++ ++   CK  R+   I  L  MV  GC P+  +
Sbjct: 459 DGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETS 518

Query: 437 YNTILGALCKSGSANQALE 493
           Y  ++  +  +G   +A+E
Sbjct: 519 YVLLIEGIAYAGWRAEAME 537



 Score =  101 bits (252), Expect = 6e-20
 Identities = 49/163 (30%), Positives = 89/163 (54%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           P++ T++ +I   C+E  + +A   L  +   G  PD  SY+ L+ AF   GR       
Sbjct: 304 PNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEY 363

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGLTPDIYSYDPLITAFCK 361
           + +MVS GC P++V Y+T++++LC  G  + A+DV + + E G  P + +Y+ + +A   
Sbjct: 364 LEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWS 423

Query: 362 EGRLDLAINFLDYMVSNGCTPDIVNYNTILGALCKSGSANQAL 490
            G    A+  +  M+  G  PD + YN+++  LC+ G  ++A+
Sbjct: 424 CGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAI 466



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 42/133 (31%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
 Frame = +2

Query: 107 PDVVSYNILLRAFLNR----GRWKDGERLVAEMVSRGCEPNVVTYSTLISSLCHDGKVED 274
           P++ + +  L   LNR    G+  +    +  +VS+G +P+VV  + LI    +   ++ 
Sbjct: 56  PNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKK 115

Query: 275 AVDVLKVMMERGLTPDIYSYDPLITAFCKEGRLDLAINFLDYMVSNGCTPDIVNYNTILG 454
           A+ V++++   G  PD+YSY+ +I+ F K  ++D A    D M S G +PD+V YN ++G
Sbjct: 116 AMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIG 174

Query: 455 ALCKSGSANQALE 493
           +LC  G    A E
Sbjct: 175 SLCSRGKLELAFE 187



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 32/104 (30%), Positives = 56/104 (53%)
 Frame = +2

Query: 2   PDMYTYNAIIRGLCKERMIDKAFEFLTSLPSPGCGPDVVSYNILLRAFLNRGRWKDGERL 181
           PD  TYN++I  LC++ ++D+A   L  + +    P V+S+NI+L       R  +G  L
Sbjct: 444 PDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIEL 503

Query: 182 VAEMVSRGCEPNVVTYSTLISSLCHDGKVEDAVDVLKVMMERGL 313
           +  MV +GC PN  +Y  LI  + + G   +A+++   +   G+
Sbjct: 504 LITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGV 547