BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025300
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-...    80   1e-13
gb|AAX92863.1| retrotransposon protein, putative, Ty3-gypsy sub-...    79   4e-13
gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gy...    79   4e-13
gb|ABA99634.1| retrotransposon protein, putative, Ty3-gypsy subc...    79   5e-13
gb|ABA99005.1| retrotransposon protein, putative, Ty3-gypsy subc...    78   7e-13

>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77548823|gb|ABA91620.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1761

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 37/87 (42%), Positives = 61/87 (70%)
 Frame = +1

Query: 10   FVGPFPITARIRELAYRVALPESLAGVHDVFHISILRK*IRAPEDVIPIADVEISKEEFG 189
            ++GP+ ITAR  E+AY++ LPE LA VH+VFH+S L+K +R PE+ +P+ ++E+ K    
Sbjct: 1650 YIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK-NLT 1708

Query: 190  YRDRSLGIIDTDVMRTRRSEV*LIKVQ 270
            Y++R + +++  V +TRR  +   KVQ
Sbjct: 1709 YKERPIKVLEEAVRQTRRKTIKFYKVQ 1735


>gb|AAX92863.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77549940|gb|ABA92737.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 495

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 37/87 (42%), Positives = 60/87 (68%)
 Frame = +1

Query: 10  FVGPFPITARIRELAYRVALPESLAGVHDVFHISILRK*IRAPEDVIPIADVEISKEEFG 189
           ++GP+ ITAR  E+AY++ LPESLA VH+VFH+S L+K +R PE  +P+ ++E+ K    
Sbjct: 384 YIGPYLITARRGEVAYQLELPESLADVHNVFHVSQLKKCLRVPEQQVPLGNIELEK-NLT 442

Query: 190 YRDRSLGIIDTDVMRTRRSEV*LIKVQ 270
           Y++R + +++    +TRR  +   KVQ
Sbjct: 443 YKERPIKVLEEAERQTRRKTIKFYKVQ 469


>gb|AAL79340.1|AC099402_4 Putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
            gi|21327374|gb|AAM48279.1|AC122148_32 Putative 22 kDa
            kafirin cluster; Ty3-Gypsy type [Oryza sativa Japonica
            Group] gi|31431495|gb|AAP53268.1| retrotransposon
            protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1230

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 40/90 (44%), Positives = 59/90 (65%)
 Frame = +1

Query: 1    SSHFVGPFPITARIRELAYRVALPESLAGVHDVFHISILRK*IRAPEDVIPIADVEISKE 180
            S  +VGPF I  RI E+AY+V LP++L GVHDVFHIS++RK +R P D + I   E+ + 
Sbjct: 1099 SPRYVGPFAIVKRIGEVAYKVKLPDALIGVHDVFHISMIRKCLRRPSDQVEIPMAEL-RN 1157

Query: 181  EFGYRDRSLGIIDTDVMRTRRSEV*LIKVQ 270
            +  Y++  + I+DT   +TR   +  +KVQ
Sbjct: 1158 DLTYQEYPVCILDTKDGKTRNRNIRFLKVQ 1187


>gb|ABA99634.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1851

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 36/87 (41%), Positives = 61/87 (70%)
 Frame = +1

Query: 10   FVGPFPITARIRELAYRVALPESLAGVHDVFHISILRK*IRAPEDVIPIADVEISKEEFG 189
            ++GP+ ITAR  E+AY++ LPE LA VH+VFH+S L+K +R PE+ +P+ ++E+ K    
Sbjct: 1740 YIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK-NLT 1798

Query: 190  YRDRSLGIIDTDVMRTRRSEV*LIKVQ 270
            Y++R + +++    +TRR+ +   KVQ
Sbjct: 1799 YKERPIKVLEEAERQTRRNTIKFYKVQ 1825


>gb|ABA99005.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 923

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 36/87 (41%), Positives = 60/87 (68%)
 Frame = +1

Query: 10   FVGPFPITARIRELAYRVALPESLAGVHDVFHISILRK*IRAPEDVIPIADVEISKEEFG 189
            ++GP+ ITAR  E+AY++ LPE LA VH+VFH+S L+K +R PE+ +P+ ++E+ K    
Sbjct: 812  YIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK-NLT 870

Query: 190  YRDRSLGIIDTDVMRTRRSEV*LIKVQ 270
            Y++R + +++    +TRR  +   KVQ
Sbjct: 871  YKERPIKVLEEAERQTRRKTIKFYKVQ 897