BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025262
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003576033.1| PREDICTED: uncharacterized protein LOC100835...    77   3e-12
gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-...    75   1e-11
gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subc...    74   2e-11
ref|XP_003581701.1| PREDICTED: uncharacterized protein LOC100824...    73   3e-11
emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]         73   4e-11

>ref|XP_003576033.1| PREDICTED: uncharacterized protein LOC100835753 [Brachypodium
           distachyon]
          Length = 723

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 53/171 (30%), Positives = 75/171 (43%)
 Frame = -1

Query: 533 ETKNTKYRGEASSVQAAPEAPMIMTQEQLAHLIRVVQPALPE*GDTFARRNKQFVALSGF 354
           +  N  + G A  +QA  +   +MTQ  L +  +   P  P   D   R    F+ L   
Sbjct: 19  DNNNGGFPGFAEFIQAQTQLVNLMTQT-LQNNRQNNPPPPPPPSDRLTR----FLRLHRP 73

Query: 353 SFTGQGGSIEADRWIRKCDMLFERMDLTPV*QRELAVHQLAGESLFWWDSIRYGI*MEEF 174
           +F      IEAD W+R  +     +  T   +   A HQL G +  WWD+ ++G   E  
Sbjct: 74  TFANSAEPIEADDWLRVIEKKLATIQCTEQEKVLHASHQLEGAAAAWWDNFKFGFDREVI 133

Query: 173 TWANFKARMEAKFIPMAIKAGLATEFSQLTQGGRLVTQYVTRFHELSRYGP 21
           TW +F        IP     GL  EF  L QG + V +Y+ RF  L+RY P
Sbjct: 134 TWDHFVRGFRTAHIPTG-SMGLMKEFRSLRQGSKSVKEYLDRFSSLARYAP 183


>gb|AAX96433.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550058|gb|ABA92855.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1636

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
 Frame = -1

Query: 512 RGEASSVQA-----APEAPMIMTQEQLAHLIRVVQPAL-PE*GDTFARRNK--QFVALSG 357
           +GEA   +A     A +  + + + QLA  +RVV+  + P   D     NK  +F+ +  
Sbjct: 172 KGEAPPQKARIHLTARKRALFVPRYQLAPKVRVVEKEVTPALADPPVVNNKLAEFIRVRP 231

Query: 356 FSFTGQGGSIEADRWIRKCDMLFERMDLTPV*QRELAVHQLAGESLFWWDSIRYG-I*ME 180
            +F+     +EA  W+   +   + +  T   +   A HQL G +  WWD  R      E
Sbjct: 232 PTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASKWWDHFRLNRTTAE 291

Query: 179 EFTWANFKARMEAKFIPMAIKAGLATEFSQLTQGGRLVTQYVTRFHELSRYGPHLVGTE 3
             TW  F A      IP    +    EF  LTQG R VT+Y+  F+ L+RY P  V T+
Sbjct: 292 PITWLEFTAAFRKTHIPSGAVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAPEDVRTD 350


>gb|ABA99486.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1595

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 54/179 (30%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
 Frame = -1

Query: 512 RGEASSVQA-----APEAPMIMTQEQLAHLIRVVQP-ALPE*GDTFARRNK--QFVALSG 357
           +GEA   +A     A +  + + + QLA  +RVV+  A P   D     NK  +F+ +  
Sbjct: 233 KGEAPPQKARVRLTARKRALFVPRYQLAPKVRVVEKEATPTLADPPVVNNKLAEFLRVRP 292

Query: 356 FSFTGQGGSIEADRWIRKCDMLFERMDLTPV*QRELAVHQLAGESLFWWDSIRYG-I*ME 180
            +F+     +EA  W+   +   + +  T   +   A HQL G +  WWD         E
Sbjct: 293 PTFSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFCLNRTTAE 352

Query: 179 EFTWANFKARMEAKFIPMAIKAGLATEFSQLTQGGRLVTQYVTRFHELSRYGPHLVGTE 3
             TW  F A      IP  + +    EF  LTQG R VT+Y+  F+ L+RY P  V T+
Sbjct: 353 PITWLEFTAAFRKTHIPSGVVSLKKKEFKSLTQGSRTVTEYLHEFNRLARYAPEDVRTD 411


>ref|XP_003581701.1| PREDICTED: uncharacterized protein LOC100824572, partial
           [Brachypodium distachyon]
          Length = 319

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 48/160 (30%), Positives = 68/160 (42%), Gaps = 8/160 (5%)
 Frame = -1

Query: 476 APMIMTQEQLAHLI--------RVVQPALPE*GDTFARRNKQFVALSGFSFTGQGGSIEA 321
           A  + TQ QL +L+        R   P  P   D   R    F+ L    F+     IEA
Sbjct: 37  AEFLQTQTQLVNLLTQNLNLNNRNNPPPPPPPSDRLTR----FLRLHPPPFSSSAEPIEA 92

Query: 320 DRWIRKCDMLFERMDLTPV*QRELAVHQLAGESLFWWDSIRYGI*MEEFTWANFKARMEA 141
           D W+R        +  T   +   A HQL G +  WWD+ ++G   +E TW +F      
Sbjct: 93  DDWLRTIQKKLVTIQCTDQERVLYASHQLEGAAAAWWDTFKFGFGGDEITWDDFVEGFHK 152

Query: 140 KFIPMAIKAGLATEFSQLTQGGRLVTQYVTRFHELSRYGP 21
             +P      +  EF  L QG   V +Y+ RF +L+RY P
Sbjct: 153 AHVPAGSMGLMRKEFRALRQGSMTVQEYLERFTQLARYAP 192


>emb|CAE04985.3| OSJNBa0057M08.11 [Oryza sativa Japonica Group]
          Length = 1664

 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
 Frame = -1

Query: 512  RGEASSVQA-----APEAPMIMTQEQLAHLIRVVQP-ALPE*GDTFARRNKQFVALSGFS 351
            +GEA   +A     A +  + + + QLA  +RVV+  A P        +  +F+ +    
Sbjct: 532  KGEAPPQKARVRLTARKRALFVPRYQLAPKVRVVEKEATPADPPVVNNKLAEFLRVRPPV 591

Query: 350  FTGQGGSIEADRWIRKCDMLFERMDLTPV*QRELAVHQLAGESLFWWDSIRYG-I*MEEF 174
            F+     +EA  W+   +   + +  T   +   A HQL G +  WWD  R      E  
Sbjct: 592  FSSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTPEPI 651

Query: 173  TWANFKARMEAKFIPMAIKAGLATEFSQLTQGGRLVTQYVTRFHELSRYGPHLVGTE 3
            +W  F A      IP  + +    EF  LTQG R VT+Y+  F+ L+RY P  V T+
Sbjct: 652  SWLEFNAAFRKTHIPSGVVSLKKKEFRSLTQGSRTVTEYLHEFNRLARYAPEEVRTD 708