BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025260
         (294 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2...   139   2e-31
ref|XP_002511599.1| pentatricopeptide repeat-containing protein,...   137   1e-30
emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]   137   1e-30
ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_002880144.1| pentatricopeptide repeat-containing protein ...   133   1e-29

>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
           predicted protein [Populus trichocarpa]
          Length = 581

 Score =  139 bits (350), Expect = 2e-31
 Identities = 64/93 (68%), Positives = 78/93 (83%)
 Frame = -1

Query: 279 LFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDLDAA 100
           LF  MP +DSAA+N +ID YVK G++  AR LFDEMPERNV+SWT++I G+C N D+ +A
Sbjct: 190 LFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSA 249

Query: 99  RSLFDAMPEKNLVSWNAMIGGYCQNKKPDKALE 1
           R LFDAMPEKNLVSWNAMIGGYCQNK+P +AL+
Sbjct: 250 RFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALK 282



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/67 (44%), Positives = 44/67 (65%)
 Frame = -1

Query: 288 SRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDL 109
           +R LFD MPE++  ++ +MI  Y  +G++  AR LFD MPE+N+VSW  +I G+C+N   
Sbjct: 218 ARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQP 277

Query: 108 DAARSLF 88
             A  LF
Sbjct: 278 HEALKLF 284


>ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548779|gb|EEF50268.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 429

 Score =  137 bits (344), Expect = 1e-30
 Identities = 63/96 (65%), Positives = 79/96 (82%)
 Frame = -1

Query: 288 SRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDL 109
           +R LFD+MPEKDSAAYNAM+D YVK+G++  A+ LFD+MP RNV+SWT++I G+C   D+
Sbjct: 173 ARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDV 232

Query: 108 DAARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKALE 1
             ARSLFDAMPE+NL SWNAMIGGY QN K  +AL+
Sbjct: 233 LTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALK 268



 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 38/88 (43%), Positives = 65/88 (73%)
 Frame = -1

Query: 294 CMSRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNC 115
           CM+R++FD M E+   ++ A+I   ++SG++  AR LFD+MPE++  ++  ++DG+ K  
Sbjct: 140 CMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMPEKDSAAYNAMLDGYVKAG 199

Query: 114 DLDAARSLFDAMPEKNLVSWNAMIGGYC 31
           D+++A+SLFD MP +N++SW +MI GYC
Sbjct: 200 DMESAQSLFDKMPARNVISWTSMIYGYC 227



 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 37/68 (54%), Positives = 49/68 (72%)
 Frame = -1

Query: 237 AMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDLDAARSLFDAMPEKNLVS 58
           A++D Y K G L +AR++FDEM ER VVSWT LI G  ++ D+  AR LFD MPEK+  +
Sbjct: 128 ALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMPEKDSAA 187

Query: 57  WNAMIGGY 34
           +NAM+ GY
Sbjct: 188 YNAMLDGY 195


>emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  137 bits (344), Expect = 1e-30
 Identities = 66/94 (70%), Positives = 80/94 (85%)
 Frame = -1

Query: 282 ELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDLDA 103
           +LFD+M EKDSAA+N MIDAYVK G++  AR+LFDEMPER+VVSWT +I G+  N +LD+
Sbjct: 349 KLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 408

Query: 102 ARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKALE 1
           ARSLFDAMPEKNL SWNAMI GY QNK+P +AL+
Sbjct: 409 ARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALK 442



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 40/94 (42%), Positives = 63/94 (67%)
 Frame = -1

Query: 288 SRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDL 109
           +R+LFD M ++   ++ A+I  YV+SG++  A +LFD+M E++  ++ T+ID + K  D+
Sbjct: 316 ARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDM 375

Query: 108 DAARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKA 7
            +AR LFD MPE+++VSW  MI GY  N   D A
Sbjct: 376 CSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSA 409



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/72 (44%), Positives = 43/72 (59%)
 Frame = -1

Query: 294 CMSRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNC 115
           C +R+LFD MPE+   ++  MI  Y  +GNL  AR LFD MPE+N+ SW  +I G+ +N 
Sbjct: 376 CSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNK 435

Query: 114 DLDAARSLFDAM 79
               A  LF  M
Sbjct: 436 QPYEALKLFHEM 447


>ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera] gi|297734603|emb|CBI16654.3| unnamed
           protein product [Vitis vinifera]
          Length = 577

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/94 (70%), Positives = 80/94 (85%)
 Frame = -1

Query: 282 ELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDLDA 103
           +LFD+M EKDSAA+N MIDAYVK G++  AR+LFDEMPER+VVSWT +I G+  N +LD+
Sbjct: 175 KLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 234

Query: 102 ARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKALE 1
           ARSLFDAMPEKNL SWNAMI GY QNK+P +AL+
Sbjct: 235 ARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALK 268



 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 40/94 (42%), Positives = 63/94 (67%)
 Frame = -1

Query: 288 SRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDL 109
           +R+LFD M ++   ++ A+I  YV+SG++  A +LFD+M E++  ++ T+ID + K  D+
Sbjct: 142 ARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDM 201

Query: 108 DAARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKA 7
            +AR LFD MPE+++VSW  MI GY  N   D A
Sbjct: 202 CSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSA 235



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/72 (44%), Positives = 43/72 (59%)
 Frame = -1

Query: 294 CMSRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNC 115
           C +R+LFD MPE+   ++  MI  Y  +GNL  AR LFD MPE+N+ SW  +I G+ +N 
Sbjct: 202 CSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNK 261

Query: 114 DLDAARSLFDAM 79
               A  LF  M
Sbjct: 262 QPYEALKLFHEM 273


>ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325983|gb|EFH56403.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 555

 Score =  133 bits (335), Expect = 1e-29
 Identities = 58/97 (59%), Positives = 80/97 (82%), Gaps = 1/97 (1%)
 Frame = -1

Query: 291 MSRELFDRMPE-KDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNC 115
           ++ +LFD+MP+ KD   YNAM+D +VKSG+++ AR LFDEM  + V++WTT+I G+C + 
Sbjct: 162 LASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSN 221

Query: 114 DLDAARSLFDAMPEKNLVSWNAMIGGYCQNKKPDKAL 4
           D+D+AR LFDAMPE+NLVSWN MIGGYCQNK+P +A+
Sbjct: 222 DIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAI 258



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 32/70 (45%), Positives = 41/70 (58%)
 Frame = -1

Query: 288 SRELFDRMPEKDSAAYNAMIDAYVKSGNLSVARELFDEMPERNVVSWTTLIDGFCKNCDL 109
           +R LFD M  K    +  MI  Y  S ++  AR+LFD MPERN+VSW T+I G+C+N   
Sbjct: 195 ARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQP 254

Query: 108 DAARSLFDAM 79
             A  LF  M
Sbjct: 255 QEAIRLFQEM 264