BLASTX nr result

ID: Cimicifuga21_contig00025205 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025205
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307623.1| predicted protein [Populus trichocarpa] gi|2...    90   2e-16
gb|ABI84259.1| tryptophan synthase alpha chain [Arachis hypogaea]      88   6e-16
ref|XP_002300807.1| predicted protein [Populus trichocarpa] gi|2...    87   1e-15
ref|XP_002281599.1| PREDICTED: indole-3-glycerol phosphate lyase...    86   4e-15
ref|XP_002877992.1| alpha subunit of tryptophan synthase [Arabid...    84   2e-14

>ref|XP_002307623.1| predicted protein [Populus trichocarpa] gi|222857072|gb|EEE94619.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = -1

Query: 247 MANALK-TSTFLQYGKLQNQAFRVPSQNPIVSFKSIIPMASLSAVPSLSISETFTKLKQQ 71
           MA ALK T +FLQ  K +   F V ++ PIVS +   PMASL+A  SL I ETF+ LK+Q
Sbjct: 1   MAVALKSTPSFLQLKKPETY-FIVRNKPPIVSTRRFAPMASLTATRSLGIGETFSNLKKQ 59

Query: 70  GKVALIPYITAGDPDLSTTAEAL 2
           GKVALIPYITAGDPDLSTTAEAL
Sbjct: 60  GKVALIPYITAGDPDLSTTAEAL 82


>gb|ABI84259.1| tryptophan synthase alpha chain [Arachis hypogaea]
          Length = 263

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 49/84 (58%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
 Frame = -1

Query: 247 MANALKTSTFLQYGK--LQNQAFRVPSQNPIVSFKSIIPMASLSAVPSLSISETFTKLKQ 74
           MA ALK++ FLQ  K  +  Q F +PS+  IVS K   P+A++  + ++ +SETFT+LK+
Sbjct: 1   MAIALKSACFLQLKKPEVNFQGF-LPSKRAIVSVKRYTPVAAIKTMETVGLSETFTRLKK 59

Query: 73  QGKVALIPYITAGDPDLSTTAEAL 2
           QGKVA IPYITAGDPDLSTTAEAL
Sbjct: 60  QGKVAFIPYITAGDPDLSTTAEAL 83


>ref|XP_002300807.1| predicted protein [Populus trichocarpa] gi|222842533|gb|EEE80080.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
 Frame = -1

Query: 247 MANALK-TSTFLQYGKLQNQAFRVPSQNPIVSFKSIIPMASLSAVPSLSISETFTKLKQQ 71
           MA ALK T +FLQ  K +   F V  +  IVS +   PMASL+A+ SL I ETF+ LK+Q
Sbjct: 1   MAAALKSTPSFLQLKKPETH-FLVRHKPTIVSTRRFAPMASLTAIRSLGIGETFSNLKKQ 59

Query: 70  GKVALIPYITAGDPDLSTTAEAL 2
           GKVALIPYITAGDPDL TTAEAL
Sbjct: 60  GKVALIPYITAGDPDLKTTAEAL 82


>ref|XP_002281599.1| PREDICTED: indole-3-glycerol phosphate lyase, chloroplastic [Vitis
           vinifera]
          Length = 316

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = -1

Query: 202 LQNQAFRVPSQNPIVSFKSIIPMASLSAVPSLSISETFTKLKQQGKVALIPYITAGDPDL 23
           L    F  PS    VSFK+  PMA+++AVP++ +SETF KL++QG+VALIPYITAGDPDL
Sbjct: 22  LFGSGFGFPSTRLSVSFKAFKPMAAVAAVPAVGLSETFDKLRKQGQVALIPYITAGDPDL 81

Query: 22  STTAEAL 2
           STTAEAL
Sbjct: 82  STTAEAL 88


>ref|XP_002877992.1| alpha subunit of tryptophan synthase [Arabidopsis lyrata subsp.
           lyrata] gi|297323830|gb|EFH54251.1| alpha subunit of
           tryptophan synthase [Arabidopsis lyrata subsp. lyrata]
          Length = 313

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 48/85 (56%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
 Frame = -1

Query: 247 MANALKTSTFLQYGKLQNQAFRVPSQNP--IVSFKSIIPMASLS-AVPSLSISETFTKLK 77
           MA A K+  F          FR  S +P   +SFK   PMASLS + P+L +++TFT+LK
Sbjct: 1   MAIAFKSGVFFLQSPKSQIGFRHASSSPDSSLSFKRFTPMASLSTSSPTLGLADTFTQLK 60

Query: 76  QQGKVALIPYITAGDPDLSTTAEAL 2
           +QGKVA IPYITAGDPDLSTTAEAL
Sbjct: 61  KQGKVAFIPYITAGDPDLSTTAEAL 85


Top