BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00025057
         (505 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   148   5e-34
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   131   7e-29
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   123   1e-26
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   123   2e-26
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   112   2e-23

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  148 bits (373), Expect = 5e-34
 Identities = 81/172 (47%), Positives = 114/172 (66%), Gaps = 13/172 (7%)
 Frame = +2

Query: 29  CKSLLFQDAHCVNYTTTATSISKQHQEETKKGKWLTLPPFTSTINPTSFAKQLSK----- 193
           C S L Q   C  + T+  ++S+ H+  +KKGKW TLP FT  ++ +S  K LS      
Sbjct: 27  CISALDQQRSC--FATSNDAVSEAHK--SKKGKWFTLPAFTPVVDASSLGKVLSGHRTDL 82

Query: 194 --------PTTTALKWVLRCCPQIPRCLVQKLFRLRQVRRESVCDTNSSDLGTKPQEQRL 349
                    +TTALKWV+RCCPQ+PR LVQKLFRLRQVRRES  +  +SD+G + QE RL
Sbjct: 83  NTGNTTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESY-NMITSDIGVQNQEHRL 141

Query: 350 RRVSAKDELSFGDKIFLPVSVQENQEHEHLEKREFRCSEDEMSFIQSLELYK 505
           +RV+AKD ++ GD+I LP++V+E       EK E+ C+++E++F+ +LELYK
Sbjct: 142 KRVAAKDLMNLGDQILLPITVEEFPS----EKHEYHCNDEEINFVHNLELYK 189


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  131 bits (329), Expect = 7e-29
 Identities = 79/179 (44%), Positives = 106/179 (59%), Gaps = 23/179 (12%)
 Frame = +2

Query: 38  LLFQDAHCVNY----------TTTATSISKQHQEETKK------GKWLTLPPFTSTINPT 169
           LLFQ   C++           TTT T      +++T K      GK+ TLPP+TSTI+ +
Sbjct: 82  LLFQSLLCISNRCIFQSHYFTTTTITQTKSSTKDQTSKNNTKNTGKFFTLPPYTSTISGS 141

Query: 170 SFAKQLSKPTT-------TALKWVLRCCPQIPRCLVQKLFRLRQVRRESVCDTNSSDLGT 328
           +  K LS   T       TALKWVLRCCP++PR LVQKLFRLRQV+RE +      ++G 
Sbjct: 142 ALGKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVKRELL------NVGD 195

Query: 329 KPQEQRLRRVSAKDELSFGDKIFLPVSVQENQEHEHLEKREFRCSEDEMSFIQSLELYK 505
              E + +RV+AKD ++ GD+IFLP+SVQ        EK++  C E E +FI+ LELYK
Sbjct: 196 GEMEHKTKRVAAKDLMNVGDRIFLPISVQALP----FEKQKCHCGEKEANFIRGLELYK 250


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudourine synthase 4, mitochondrial; AltName: Full=RNA
           pseudouridylate synthase 4; AltName: Full=RNA-uridine
           isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  123 bits (309), Expect = 1e-26
 Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 12/146 (8%)
 Frame = +2

Query: 104 QEETKKGKWLTLPPFTSTINPTSFAKQL-----------SKPTTTALKWVLRCCPQIPRC 250
           Q +  +GKWLTLPPF+ TI+ T+  K L               TTAL+W+LRC P +PR 
Sbjct: 47  QTDDSRGKWLTLPPFSPTIDGTAVGKDLLSDGDSVKSSTDNSKTTALRWILRCRPDLPRT 106

Query: 251 LVQKLFRLRQVRRESVCDTNSSDLGTKPQEQRLRRVSAKDELSFGDKIFLPVSVQENQEH 430
           LVQKLFRLRQVRRE     +  +L    Q  +L+RV+AK+ L+ GD+I+LP+SV  +   
Sbjct: 107 LVQKLFRLRQVRREMSMSVDGDEL----QRSQLKRVAAKESLNVGDRIYLPLSVDNDTPQ 162

Query: 431 EHLEKRE-FRCSEDEMSFIQSLELYK 505
               K+E F+CS++E  F+ SL LYK
Sbjct: 163 TPPAKKESFQCSDEERKFVCSLVLYK 188


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score =  123 bits (308), Expect = 2e-26
 Identities = 73/170 (42%), Positives = 98/170 (57%), Gaps = 12/170 (7%)
 Frame = +2

Query: 32  KSLLFQDAHCVNYTTTATSISKQHQEETKKGKWLTLPPFTSTINPTSFAKQL-------- 187
           KSL     HC    +TA       Q +  +G WLTLPPF+ TI+ T+  K L        
Sbjct: 30  KSLSAAAHHCSRSYSTA-------QTDDSRGNWLTLPPFSPTIDGTAVGKDLLSDGDSVK 82

Query: 188 ---SKPTTTALKWVLRCCPQIPRCLVQKLFRLRQVRRESVCDTNSSDLGTKPQEQRLRRV 358
                  TTAL+W+LRC P +PR LVQKLFRLRQVRR+     +  +L    Q  +L+RV
Sbjct: 83  ASTDNSKTTALRWILRCRPDLPRTLVQKLFRLRQVRRQMSLSVDGHEL----QRSQLKRV 138

Query: 359 SAKDELSFGDKIFLPVSVQENQEHEHLEKRE-FRCSEDEMSFIQSLELYK 505
           +AK+ L+ GD+I+LP+SV  +       K+E F+CSE+E  F+ SL LYK
Sbjct: 139 AAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQCSEEERKFVCSLVLYK 188


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  112 bits (281), Expect = 2e-23
 Identities = 69/170 (40%), Positives = 100/170 (58%), Gaps = 14/170 (8%)
 Frame = +2

Query: 38  LLFQDAHCVNYTTTATSISK---QHQEETKKGKWLTLPPFTSTINPTSFAKQL------- 187
           L F   H +  T   ++ S+   Q + E    +W TLPP+T+T+N +    ++       
Sbjct: 27  LYFSIFHVLKSTLALSNASEPVSQQKNEKGSNRWFTLPPYTATVNGSILGNRIMNGGGQA 86

Query: 188 ----SKPTTTALKWVLRCCPQIPRCLVQKLFRLRQVRRESVCDTNSSDLGTKPQEQRLRR 355
               S    TALKWV+RCCP++PR LVQKLFRLR+VRR S    N S+   + ++Q L+R
Sbjct: 87  ELGASTAAITALKWVIRCCPELPRSLVQKLFRLRKVRRGSSMIEN-SEYNLEARDQ-LKR 144

Query: 356 VSAKDELSFGDKIFLPVSVQENQEHEHLEKREFRCSEDEMSFIQSLELYK 505
           V+AKD L+ GD+IFLP+SVQ        EK    C+++E +F+ SL L+K
Sbjct: 145 VAAKDILNVGDQIFLPMSVQVFS----TEKTRDYCNKEEETFMHSLVLHK 190