BLASTX nr result

ID: Cimicifuga21_contig00024444 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024444
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002516324.1| hypothetical protein RCOM_1189860 [Ricinus c...   112   4e-23
ref|XP_002268896.2| PREDICTED: E3 ubiquitin-protein ligase UPL1-...   105   5e-21
emb|CBI39750.3| unnamed protein product [Vitis vinifera]              105   5e-21
ref|XP_002309929.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
emb|CBI16839.3| unnamed protein product [Vitis vinifera]               92   6e-17

>ref|XP_002516324.1| hypothetical protein RCOM_1189860 [Ricinus communis]
           gi|223544554|gb|EEF46071.1| hypothetical protein
           RCOM_1189860 [Ricinus communis]
          Length = 364

 Score =  112 bits (279), Expect = 4e-23
 Identities = 54/113 (47%), Positives = 74/113 (65%)
 Frame = -1

Query: 392 VLVETSLSTHIAMPLSPHATAADLKRDLGNEHPICFPSIGVIKINGLTVKRGACYYHLPD 213
           V ++T++ THIA  +SP  TAAD KR+L  EH   FP++G IK + L V+R +C+YHL +
Sbjct: 9   VFIDTNIGTHIAASVSPDITAADFKRELEREHLSFFPTLGEIKAHVLMVRRKSCFYHLTE 68

Query: 212 SIPVKDVFQGWKGNWILHVDATPSNHSDKPHQSESLAARFRENVNSGSGVAVS 54
           S+P+K  FQG KG W LHV   PS++ DKP  S  +AAR   + + GS V  S
Sbjct: 69  SLPIKYAFQGLKGTWFLHVKVQPSSNVDKPGSSHDVAARSDNHFSDGSIVTPS 121


>ref|XP_002268896.2| PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Vitis vinifera]
          Length = 4116

 Score =  105 bits (261), Expect = 5e-21
 Identities = 46/119 (38%), Positives = 71/119 (59%)
 Frame = -1

Query: 392 VLVETSLSTHIAMPLSPHATAADLKRDLGNEHPICFPSIGVIKINGLTVKRGACYYHLPD 213
           V  +T++ TH+A+ +SP+ T+ D  R+L   H  CFP +G I++ GL V+R +C+YHLP+
Sbjct: 9   VFTDTNMGTHVALSVSPNITSGDFMRELEKTHFNCFPELGEIRVYGLMVRRKSCFYHLPE 68

Query: 212 SIPVKDVFQGWKGNWILHVDATPSNHSDKPHQSESLAARFRENVNSGSGVAVSRKPGNH 36
           S+P+K  FQG KG W LH +A+    SD    S  +    R +   GS V    +P ++
Sbjct: 69  SVPIKHAFQGLKGTWFLHTEASSLGGSDLSSLSNHVTVETRNHTYDGSNVTDPMEPKSY 127


>emb|CBI39750.3| unnamed protein product [Vitis vinifera]
          Length = 379

 Score =  105 bits (261), Expect = 5e-21
 Identities = 46/119 (38%), Positives = 71/119 (59%)
 Frame = -1

Query: 392 VLVETSLSTHIAMPLSPHATAADLKRDLGNEHPICFPSIGVIKINGLTVKRGACYYHLPD 213
           V  +T++ TH+A+ +SP+ T+ D  R+L   H  CFP +G I++ GL V+R +C+YHLP+
Sbjct: 9   VFTDTNMGTHVALSVSPNITSGDFMRELEKTHFNCFPELGEIRVYGLMVRRKSCFYHLPE 68

Query: 212 SIPVKDVFQGWKGNWILHVDATPSNHSDKPHQSESLAARFRENVNSGSGVAVSRKPGNH 36
           S+P+K  FQG KG W LH +A+    SD    S  +    R +   GS V    +P ++
Sbjct: 69  SVPIKHAFQGLKGTWFLHTEASSLGGSDLSSLSNHVTVETRNHTYDGSNVTDPMEPKSY 127


>ref|XP_002309929.1| predicted protein [Populus trichocarpa] gi|222852832|gb|EEE90379.1|
           predicted protein [Populus trichocarpa]
          Length = 435

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 50/109 (45%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
 Frame = -1

Query: 392 VLVETSLSTHIAMPLSPHATAADLKRDLGNEHPICFPSIGVIKINGLT-VKRGACYYHLP 216
           V  +T++ THIAM +SP  T AD KR+L   H  CFP +G IK+  L  V+R  C+YHL 
Sbjct: 12  VFTDTNMDTHIAMGISPDITVADFKRELEKMHFNCFPKLGEIKVCELKQVRRNNCFYHLL 71

Query: 215 DSIPVKDVFQGWKGNWILHVDATPSNHSDKPHQSESLAARFRENVNSGS 69
           +S+P+K  FQG KGNW LHV+   SN     H  + LAA+  ++++ GS
Sbjct: 72  ESLPIKYAFQGLKGNWFLHVEIRSSNSFRNQHLPQCLAAK-DDHISDGS 119


>emb|CBI16839.3| unnamed protein product [Vitis vinifera]
          Length = 1309

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 46/84 (54%), Positives = 57/84 (67%)
 Frame = -1

Query: 392 VLVETSLSTHIAMPLSPHATAADLKRDLGNEHPICFPSIGVIKINGLTVKRGACYYHLPD 213
           V ++TSL THIAM +S   T ADLK+ +  EHP+CF SIG IKI+ L VKR   +YHL D
Sbjct: 18  VFIDTSLDTHIAMIVSDVDTVADLKKKILLEHPLCFSSIGKIKIHALKVKRKGFFYHLSD 77

Query: 212 SIPVKDVFQGWKGNWILHVDATPS 141
           S+ V+  F G K  W LHVDA+ S
Sbjct: 78  SMFVRSAFDGVKRTWFLHVDASSS 101


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