BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024378
         (748 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95128.1| retrotransposon protein, putative, Ty3-gypsy subc...   186   1e-46
gb|AAX94824.1| retrotransposon protein, putative, Ty3-gypsy sub-...   186   1e-46
gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]     185   2e-46
gb|ABA97516.1| retrotransposon protein, putative, Ty3-gypsy subc...   184   2e-46
gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]               187   2e-46

>gb|ABA95128.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1309

 Score =  186 bits (471), Expect(2) = 1e-46
 Identities = 88/188 (46%), Positives = 125/188 (66%)
 Frame = -3

Query: 644  QPDLISRVAKAQLSDPTLVARRSKLKENKPSEXXXXXXXXXXXXXRLCVPEVEEIRMEIL 465
            +P L+ +V  AQ++DP +   +  ++  K  +             RLCVP+ +E++  IL
Sbjct: 821  RPTLVDQVRAAQVNDPEIAELKKNMRVGKARDFHEDEHGTIWLGERLCVPDDKELKDLIL 880

Query: 464  NEAHRSKFTIHPGSSKMYKDLKRTFWWDGLKKDVAVYVSKWEVYQ*VKAEHQRPTGLFKP 285
             EAH+++++IHPGS+KMY+DLK  FWW  ++K++A +V+  +V Q VKAEHQRP GL +P
Sbjct: 881  TEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRKEIAEFVALCDVCQRVKAEHQRPAGLLQP 940

Query: 284  LDIPEWK*EHISMDFIDGLP*MKKGKESIWVIMDRLTN*THFLPIRAKRTKKQLADLYII 105
            L IPEWK E I MDFI GLP    G +SIWV+MDRLT   HF+P+    T K+LA+LY+ 
Sbjct: 941  LQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVMDRLTKVAHFIPVHTTYTGKRLAELYLA 1000

Query: 104  EIIKLHGV 81
             I+ LHGV
Sbjct: 1001 RIMCLHGV 1008



 Score = 26.9 bits (58), Expect(2) = 1e-46
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72   IISDIYSLFASHFWKSLQICLGSR 1
            I+SD  S F S FW+ LQ  LG+R
Sbjct: 1012 IVSDRGSQFTSKFWQKLQEELGTR 1035


>gb|AAX94824.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550390|gb|ABA93187.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 562

 Score =  186 bits (471), Expect(2) = 1e-46
 Identities = 89/188 (47%), Positives = 124/188 (65%)
 Frame = -3

Query: 644 QPDLISRVAKAQLSDPTLVARRSKLKENKPSEXXXXXXXXXXXXXRLCVPEVEEIRMEIL 465
           QP L+ +V  AQ SDP +   +  ++  K                RLCVPE +E++  IL
Sbjct: 206 QPTLVEQVRIAQTSDPEITELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELKDLIL 265

Query: 464 NEAHRSKFTIHPGSSKMYKDLKRTFWWDGLKKDVAVYVSKWEVYQ*VKAEHQRPTGLFKP 285
            EAH+++++IHPGS+KMY+DLK  FWW  +++++A +V+  +VYQ VKAEHQRP GL +P
Sbjct: 266 TEAHQTQYSIHPGSTKMYQDLKEKFWWISMRREIAEFVALCDVYQRVKAEHQRPAGLLQP 325

Query: 284 LDIPEWK*EHISMDFIDGLP*MKKGKESIWVIMDRLTN*THFLPIRAKRTKKQLADLYII 105
           L IPEWK E I MDFI GLP    G +SIWV++DRLT   HF+P+    + K+LA+LY+ 
Sbjct: 326 LQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVIDRLTKVAHFIPVHTTYSGKKLAELYLA 385

Query: 104 EIIKLHGV 81
            I+ LHGV
Sbjct: 386 RIMCLHGV 393



 Score = 26.9 bits (58), Expect(2) = 1e-46
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  IISDIYSLFASHFWKSLQICLGSR 1
           I+SD  S F S FW+ LQ  LG+R
Sbjct: 397 IVSDRGSQFTSKFWQKLQEELGTR 420


>gb|AAV59338.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 1238

 Score =  185 bits (469), Expect(2) = 2e-46
 Identities = 89/188 (47%), Positives = 123/188 (65%)
 Frame = -3

Query: 644  QPDLISRVAKAQLSDPTLVARRSKLKENKPSEXXXXXXXXXXXXXRLCVPEVEEIRMEIL 465
            QP L+ +V  AQ SDP +   +  ++  K                RLCVPE +E++  IL
Sbjct: 750  QPTLVEQVRIAQASDPEIAELKKNMRVGKARGFVEDEQGTIWMGERLCVPENKELKDLIL 809

Query: 464  NEAHRSKFTIHPGSSKMYKDLKRTFWWDGLKKDVAVYVSKWEVYQ*VKAEHQRPTGLFKP 285
             EAH+++++IHPGS+KMY+DLK  FWW  +++++A +V+   VYQ VKAEHQRP GL +P
Sbjct: 810  TEAHQTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCNVYQRVKAEHQRPAGLLQP 869

Query: 284  LDIPEWK*EHISMDFIDGLP*MKKGKESIWVIMDRLTN*THFLPIRAKRTKKQLADLYII 105
            L IPEWK E I MDFI GLP    G +SIWV++DRLT   HF+P+    + K+LA+LY+ 
Sbjct: 870  LQIPEWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYSGKKLAELYLA 929

Query: 104  EIIKLHGV 81
             I+ LHGV
Sbjct: 930  RIMCLHGV 937



 Score = 26.9 bits (58), Expect(2) = 2e-46
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 72   IISDIYSLFASHFWKSLQICLGSR 1
            I+SD  S F S FW+ LQ  LG+R
Sbjct: 941  IVSDRGSQFTSKFWQKLQEELGTR 964


>gb|ABA97516.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1113

 Score =  184 bits (468), Expect(2) = 2e-46
 Identities = 86/188 (45%), Positives = 126/188 (67%)
 Frame = -3

Query: 644  QPDLISRVAKAQLSDPTLVARRSKLKENKPSEXXXXXXXXXXXXXRLCVPEVEEIRMEIL 465
            +P L+ +V  AQ++DP +   +  ++  K  +             RLCVP+ +E++  IL
Sbjct: 770  RPTLVDQVRAAQVNDPEIAELKKNMRVGKARDFLEDEHGTIWMGERLCVPDDKELKDLIL 829

Query: 464  NEAHRSKFTIHPGSSKMYKDLKRTFWWDGLKKDVAVYVSKWEVYQ*VKAEHQRPTGLFKP 285
             EAH+++++IHPGS+KMY+DLK  FWWD +++++A +++  +V Q VKAEHQRP GL +P
Sbjct: 830  TEAHQTQYSIHPGSTKMYQDLKEKFWWDSMRREIAEFIALCDVCQRVKAEHQRPAGLLQP 889

Query: 284  LDIPEWK*EHISMDFIDGLP*MKKGKESIWVIMDRLTN*THFLPIRAKRTKKQLADLYII 105
            L IPEWK E I MDFI GLP    G +SIWV++DRLT   HF+P+    T K+LA+LY+ 
Sbjct: 890  LQIPEWKWEEIGMDFIAGLPQTSSGHDSIWVVVDRLTKVAHFIPVHTTYTGKKLAELYLG 949

Query: 104  EIIKLHGV 81
             I+ LHGV
Sbjct: 950  RIMCLHGV 957



 Score = 27.3 bits (59), Expect(2) = 2e-46
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 72   IISDIYSLFASHFWKSLQICLGSR 1
            IISD  S F S FW+ LQ  LG+R
Sbjct: 961  IISDRGSQFTSKFWQKLQKELGTR 984


>gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]
          Length = 924

 Score =  187 bits (476), Expect(2) = 2e-46
 Identities = 92/193 (47%), Positives = 125/193 (64%)
 Frame = -3

Query: 662  LCNIMVQPDLISRVAKAQLSDPTLVARRSKLKENKPSEXXXXXXXXXXXXXRLCVPEVEE 483
            L  + +Q DL  R+ +AQ   P +     +++  K  E             R+CVP  E 
Sbjct: 436  LSELRIQYDLEDRIRRAQRGCPEIQEVHERMEGGKCPEFRVDERGTYWCKNRICVPSDEP 495

Query: 482  IRMEILNEAHRSKFTIHPGSSKMYKDLKRTFWWDGLKKDVAVYVSKWEVYQ*VKAEHQRP 303
            +R EIL+EAH S++ IHPGS+KMY DL++ FWW  ++KD+A +V++ +    VKAEHQRP
Sbjct: 496  LREEILSEAHDSRYCIHPGSTKMYADLRKVFWWKDMRKDIAGHVARCDTCNRVKAEHQRP 555

Query: 302  TGLFKPLDIPEWK*EHISMDFIDGLP*MKKGKESIWVIMDRLTN*THFLPIRAKRTKKQL 123
             GL KPLD+PEWK E ISMDFI GLP   KG +SIWVI+DRLT   HF+P++     +QL
Sbjct: 556  AGLLKPLDVPEWKWEGISMDFIVGLPRSPKGHDSIWVIVDRLTKVAHFIPVKTVYRTEQL 615

Query: 122  ADLYIIEIIKLHG 84
            ADLY+  I++LHG
Sbjct: 616  ADLYVDHILRLHG 628



 Score = 24.3 bits (51), Expect(2) = 2e-46
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 72  IISDIYSLFASHFWKSLQICLGSR 1
           IISD    + S FW+SL   +G+R
Sbjct: 633 IISDRGPQWVSRFWQSLHKAIGTR 656