BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024356
         (1231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]   317   4e-84
ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251...   307   4e-81
emb|CBI25450.3| unnamed protein product [Vitis vinifera]              301   2e-79
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,...   280   4e-73
ref|NP_191162.2| pentatricopeptide repeat-containing protein [Ar...   265   2e-68

>emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]
          Length = 330

 Score =  317 bits (812), Expect = 4e-84
 Identities = 166/320 (51%), Positives = 216/320 (67%), Gaps = 1/320 (0%)
 Frame = -2

Query: 1215 LLRKTPQNPSIQIPSFLCVTSRFFSQHTHHPNPNESSIYDEPTSASYDELVANVGRSGDL 1036
            L RK P +P +     LC TSRFF+  T +PNP E      PT A YD L+   GR+ D 
Sbjct: 7    LARKNPNSPFL-----LCNTSRFFN--TQNPNPYE------PTVAYYDNLINTAGRNRDF 53

Query: 1035 TTLRRLLNKRYKDGCFNTSNTFKFXXXXXXXXXXXXXXXXXXXXD-KGFARKNAFDSLIA 859
             ++  LLNKR +DGCFNT++TF F                      KGF RK+A+DSLIA
Sbjct: 54   ASVCNLLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFXRKSAYDSLIA 113

Query: 858  HLCKSNRIDESLRVVDTMIVKEIGVKACTFHPLLNALTRKKCFDKALQVLEKMKENDISI 679
             LC+  R+DESLR+VDTM+  + GV ACTFHP+LN LTRK+  ++A +V+  M+E+ +S 
Sbjct: 114  RLCRLKRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSP 173

Query: 678  DITSYNYILSSYCFNGDLSAAAGVLERIVEQGLKVDPRTYDALVMGACRVGKVEGALVLL 499
            D+T+YNY+L++YCF G+L AA GVL  + E+G+  D RTYDALV+GAC+ GKVEGA+V+L
Sbjct: 174  DVTAYNYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVL 233

Query: 498  RRMEEERVPPIYSTHTHVIRSLLGFGCFAQAVEFVMAFAGRNKDLDTENFGYLGSHLIRR 319
            RRME++ VP +YSTH HVI  LL  G +AQAVEFVM   G++K LD E+FG LGS LI  
Sbjct: 234  RRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINL 293

Query: 318  KRVKEAKLVFGEMEKMGLAM 259
            KR +EAKLV  EM + G+ M
Sbjct: 294  KRFEEAKLVLKEMRRRGIVM 313


>ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera]
          Length = 613

 Score =  307 bits (786), Expect = 4e-81
 Identities = 161/308 (52%), Positives = 209/308 (67%), Gaps = 1/308 (0%)
 Frame = -2

Query: 1215 LLRKTPQNPSIQIPSFLCVTSRFFSQHTHHPNPNESSIYDEPTSASYDELVANVGRSGDL 1036
            L RK P +P +     LC TSRFF+  T +PNP E      PT A YD L+   GR+ D 
Sbjct: 7    LARKNPNSPFL-----LCNTSRFFN--TQNPNPYE------PTVAYYDNLINTAGRNRDF 53

Query: 1035 TTLRRLLNKRYKDGCFNTSNTFKFXXXXXXXXXXXXXXXXXXXXD-KGFARKNAFDSLIA 859
             ++  LLNKR +DGCFNT++TF F                      KGF RK+A+DSLIA
Sbjct: 54   ASVCNLLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFLRKSAYDSLIA 113

Query: 858  HLCKSNRIDESLRVVDTMIVKEIGVKACTFHPLLNALTRKKCFDKALQVLEKMKENDISI 679
             LC+  R+DESLR+VDTM+  + GV ACTFHP+LN LTRK+  ++A +V+  M+E+ +S 
Sbjct: 114  RLCRLKRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSP 173

Query: 678  DITSYNYILSSYCFNGDLSAAAGVLERIVEQGLKVDPRTYDALVMGACRVGKVEGALVLL 499
            D+T+YNY+L++YCF G+L AA GVL  + E+G+  D RTYDALV+GAC+ GKVEGA+V+L
Sbjct: 174  DVTAYNYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVL 233

Query: 498  RRMEEERVPPIYSTHTHVIRSLLGFGCFAQAVEFVMAFAGRNKDLDTENFGYLGSHLIRR 319
            RRME++ VP +YSTH HVI  LL  G +AQAVEFVM   G++K LD E+FG LGS LI  
Sbjct: 234  RRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINL 293

Query: 318  KRVKEAKL 295
            KR +EAKL
Sbjct: 294  KRFEEAKL 301


>emb|CBI25450.3| unnamed protein product [Vitis vinifera]
          Length = 527

 Score =  301 bits (772), Expect = 2e-79
 Identities = 158/305 (51%), Positives = 205/305 (67%), Gaps = 1/305 (0%)
 Frame = -2

Query: 1215 LLRKTPQNPSIQIPSFLCVTSRFFSQHTHHPNPNESSIYDEPTSASYDELVANVGRSGDL 1036
            L RK P +P +     LC TSRFF+  T +PNP E      PT A YD L+   GR+ D 
Sbjct: 7    LARKNPNSPFL-----LCNTSRFFN--TQNPNPYE------PTVAYYDNLINTAGRNRDF 53

Query: 1035 TTLRRLLNKRYKDGCFNTSNTFKFXXXXXXXXXXXXXXXXXXXXD-KGFARKNAFDSLIA 859
             ++  LLNKR +DGCFNT++TF F                      KGF RK+A+DSLIA
Sbjct: 54   ASVCNLLNKRVRDGCFNTNHTFDFITNTDAGLSVLDELSQALAHLDKGFLRKSAYDSLIA 113

Query: 858  HLCKSNRIDESLRVVDTMIVKEIGVKACTFHPLLNALTRKKCFDKALQVLEKMKENDISI 679
             LC+  R+DESLR+VDTM+  + GV ACTFHP+LN LTRK+  ++A +V+  M+E+ +S 
Sbjct: 114  RLCRLKRVDESLRLVDTMVQSDHGVNACTFHPILNVLTRKRKMEEAWRVMTIMRESGVSP 173

Query: 678  DITSYNYILSSYCFNGDLSAAAGVLERIVEQGLKVDPRTYDALVMGACRVGKVEGALVLL 499
            D+T+YNY+L++YCF G+L AA GVL  + E+G+  D RTYDALV+GAC+ GKVEGA+V+L
Sbjct: 174  DVTAYNYLLTAYCFTGNLEAAVGVLTEMEEEGMAADARTYDALVLGACKAGKVEGAMVVL 233

Query: 498  RRMEEERVPPIYSTHTHVIRSLLGFGCFAQAVEFVMAFAGRNKDLDTENFGYLGSHLIRR 319
            RRME++ VP +YSTH HVI  LL  G +AQAVEFVM   G++K LD E+FG LGS LI  
Sbjct: 234  RRMEDDGVPILYSTHAHVINGLLKLGYYAQAVEFVMICGGKDKKLDEESFGILGSRLINL 293

Query: 318  KRVKE 304
            KR  E
Sbjct: 294  KRTME 298


>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score =  280 bits (717), Expect = 4e-73
 Identities = 150/311 (48%), Positives = 201/311 (64%), Gaps = 1/311 (0%)
 Frame = -2

Query: 1173 SFLCVTSRFFSQHTHHPNPNESSIYDEPTSASYDELVANVGRSGDLTTLRRLLNKRYKDG 994
            S L +T+R F+      N   +S  D+PT+A YD LV   G   D  TL  LLNKR +D 
Sbjct: 302  SILSLTTRCFTTQ----NDKLNSFPDKPTAAYYDGLVNAAGHERDFKTLHHLLNKRVRDH 357

Query: 993  CFNTSNTFKFXXXXXXXXXXXXXXXXXXXXD-KGFARKNAFDSLIAHLCKSNRIDESLRV 817
            CFNT+NTFKF                      KG  R +A++ LIA LCK +RI ESL +
Sbjct: 358  CFNTTNTFKFITNTDNSLSVLDDLIQTLARLDKGIPRMSAYNMLIARLCKLDRIQESLHI 417

Query: 816  VDTMIVKEIGVKACTFHPLLNALTRKKCFDKALQVLEKMKENDISIDITSYNYILSSYCF 637
            V  M  ++ G+  C+FHP+L++LT+KK  + + +V+E M+   +  D+T++NY+L++YC+
Sbjct: 418  VHIMADEQYGLSTCSFHPILSSLTQKKKMEDSWKVIEMMRAIGVLPDLTAFNYLLTAYCY 477

Query: 636  NGDLSAAAGVLERIVEQGLKVDPRTYDALVMGACRVGKVEGALVLLRRMEEERVPPIYST 457
            NG+L  A  V++RI E+GL  D RTYDALV+GACR GKVE ALV+LRRM ++ V  +YST
Sbjct: 478  NGNLVDACKVMKRIEEEGLGADARTYDALVLGACRTGKVEAALVVLRRMVDDGVHVLYST 537

Query: 456  HTHVIRSLLGFGCFAQAVEFVMAFAGRNKDLDTENFGYLGSHLIRRKRVKEAKLVFGEME 277
            H HVI +LL  GC+ QA +FVM F GR+   DTE FG L S LI+ +R +EAKLV  EME
Sbjct: 538  HVHVINALLRLGCYVQATKFVMIFGGRDIAFDTEIFGILASKLIKLERFEEAKLVLKEME 597

Query: 276  KMGLAMGDKLR 244
            + GL MGDKLR
Sbjct: 598  ERGLVMGDKLR 608


>ref|NP_191162.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|218546756|sp|Q9LY43.2|PP283_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At3g56030 gi|332645947|gb|AEE79468.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 351

 Score =  265 bits (676), Expect = 2e-68
 Identities = 140/318 (44%), Positives = 202/318 (63%), Gaps = 4/318 (1%)
 Frame = -2

Query: 1161 VTSRFFSQHTHHPNPNESSIYDEPTSASYDELVANVGRSGDLTTLRRLLNKRYKDGCFNT 982
            ++ R FS  T +PNP  S      T   +D L+   G SGD   +RRLLN R  + CFNT
Sbjct: 36   ISGRSFS--TVNPNPTASP--GRRTCVEFDNLIFKAGSSGDFEAVRRLLNSRVVNACFNT 91

Query: 981  SNTFKFXXXXXXXXXXXXXXXXXXXXDK-GFARKNAFDSLIAHLCKSNRIDESLRVVDTM 805
            + TFKF                       G+ RK+++++LIA LCK  RID++L +++ M
Sbjct: 92   TATFKFLTNTDSYSSSLEDLRRILPQTDAGYTRKHSYETLIARLCKLGRIDDALVLINDM 151

Query: 804  IVKEIGVKACTFHPLLNALTRKKCFDKALQVLEKMKENDISIDITSYNYILSSYCFNGDL 625
             + E G+  C FHP+LN LT+K   ++A +V+E M+ + I +D+TSYNY L+S+C++GD+
Sbjct: 152  AIGEFGLSTCVFHPILNTLTKKNRIEEAWRVVELMRSHAIPVDVTSYNYFLTSHCYDGDV 211

Query: 624  SAAAGVLERIVEQG---LKVDPRTYDALVMGACRVGKVEGALVLLRRMEEERVPPIYSTH 454
            + A+ VL ++ E+    +  D RTYDALV+GAC+ G+VE A+ +LRRMEEE +  +Y+TH
Sbjct: 212  AEASRVLRKMEEEEEGVMSPDTRTYDALVLGACKSGRVEAAMAILRRMEEEGLSVLYATH 271

Query: 453  THVIRSLLGFGCFAQAVEFVMAFAGRNKDLDTENFGYLGSHLIRRKRVKEAKLVFGEMEK 274
             HVI  ++  G +A +VEFVMA+AG++K LD EN G L S LI+RKR KEAK+V  EM  
Sbjct: 272  AHVIGEMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKLIKRKRFKEAKMVLKEMSV 331

Query: 273  MGLAMGDKLRSQYKNFLL 220
             GL MGD LR  ++  +L
Sbjct: 332  RGLRMGDALREFHEKNVL 349