BLASTX nr result

ID: Cimicifuga21_contig00024264 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024264
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276467.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   141   5e-32
ref|XP_003519940.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   115   4e-24
ref|XP_004167588.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   115   5e-24
ref|XP_004145645.1| PREDICTED: DEAD-box ATP-dependent RNA helica...   115   5e-24
ref|XP_002320399.1| predicted protein [Populus trichocarpa] gi|2...   113   2e-23

>ref|XP_002276467.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Vitis
           vinifera]
          Length = 540

 Score =  141 bits (356), Expect = 5e-32
 Identities = 66/101 (65%), Positives = 79/101 (78%), Gaps = 7/101 (6%)
 Frame = -3

Query: 285 MED----NMNENSSAISNGGETT---VKEKCWDQREALPGEPICVICGRYGEYICDETDD 127
           MED    N  +NS  +++  E T   VKE+CWDQREALPGEP CVICGRYGEYICDETDD
Sbjct: 1   MEDGKKGNQGKNSVELTDDNEGTADGVKERCWDQREALPGEPKCVICGRYGEYICDETDD 60

Query: 126 DVCSLGCKQTLLSKLSKNQKPENLPPPARIPVTDECFYVKD 4
           D+CSL CKQTLL +++K++ P  LPPP R+P TDECFYV+D
Sbjct: 61  DICSLECKQTLLCRVAKSRLPVVLPPPKRLPTTDECFYVRD 101


>ref|XP_003519940.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Glycine
           max]
          Length = 528

 Score =  115 bits (288), Expect = 4e-24
 Identities = 54/81 (66%), Positives = 60/81 (74%)
 Frame = -3

Query: 246 NGGETTVKEKCWDQREALPGEPICVICGRYGEYICDETDDDVCSLGCKQTLLSKLSKNQK 67
           N  E  VK +  DQR ALPGEP C+ICGRYGEYICDETDDDVCSL CKQ LL +++K+  
Sbjct: 21  NDAEDEVKLRSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRIAKSSS 80

Query: 66  PENLPPPARIPVTDECFYVKD 4
               PPP RIP  DECFYVKD
Sbjct: 81  ----PPPKRIPAADECFYVKD 97


>ref|XP_004167588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Cucumis
           sativus]
          Length = 532

 Score =  115 bits (287), Expect = 5e-24
 Identities = 50/81 (61%), Positives = 62/81 (76%)
 Frame = -3

Query: 246 NGGETTVKEKCWDQREALPGEPICVICGRYGEYICDETDDDVCSLGCKQTLLSKLSKNQK 67
           + GE+ VK KC +QREA PGEP CV+CGRYGEYICDETDDDVCS+ CKQ++L K++    
Sbjct: 21  DSGESPVKVKCIEQREAFPGEPKCVVCGRYGEYICDETDDDVCSMECKQSVLRKVANTMA 80

Query: 66  PENLPPPARIPVTDECFYVKD 4
           P+   P  R+P  DECFYVK+
Sbjct: 81  PDK-APSKRLPAADECFYVKE 100


>ref|XP_004145645.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 41-like [Cucumis
           sativus]
          Length = 532

 Score =  115 bits (287), Expect = 5e-24
 Identities = 50/81 (61%), Positives = 62/81 (76%)
 Frame = -3

Query: 246 NGGETTVKEKCWDQREALPGEPICVICGRYGEYICDETDDDVCSLGCKQTLLSKLSKNQK 67
           + GE+ VK KC +QREA PGEP CV+CGRYGEYICDETDDDVCS+ CKQ++L K++    
Sbjct: 21  DSGESPVKVKCIEQREAFPGEPKCVVCGRYGEYICDETDDDVCSMECKQSVLRKVANTMA 80

Query: 66  PENLPPPARIPVTDECFYVKD 4
           P+   P  R+P  DECFYVK+
Sbjct: 81  PDK-APSKRLPAADECFYVKE 100


>ref|XP_002320399.1| predicted protein [Populus trichocarpa] gi|222861172|gb|EEE98714.1|
           predicted protein [Populus trichocarpa]
          Length = 524

 Score =  113 bits (282), Expect = 2e-23
 Identities = 50/83 (60%), Positives = 59/83 (71%)
 Frame = -3

Query: 252 ISNGGETTVKEKCWDQREALPGEPICVICGRYGEYICDETDDDVCSLGCKQTLLSKLSKN 73
           +S      VK+   DQREALPGEPICV+CGRYGEYICD+TD D+CSL CKQTLL + +  
Sbjct: 11  VSEAAGDDVKKTSRDQREALPGEPICVVCGRYGEYICDQTDSDICSLECKQTLLGRAADT 70

Query: 72  QKPENLPPPARIPVTDECFYVKD 4
             P   P P R+  TDECFYV+D
Sbjct: 71  HLPVGHPLPKRLAATDECFYVRD 93


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