BLASTX nr result

ID: Cimicifuga21_contig00024004 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00024004
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004151988.1| PREDICTED: probable arabinose 5-phosphate is...   100   1e-19
ref|XP_002532039.1| Polysialic acid capsule expression protein k...    97   1e-18
ref|XP_002339493.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002306858.1| predicted protein [Populus trichocarpa] gi|2...    94   1e-17
ref|XP_002302040.1| predicted protein [Populus trichocarpa] gi|1...    94   1e-17

>ref|XP_004151988.1| PREDICTED: probable arabinose 5-phosphate isomerase-like [Cucumis
           sativus] gi|449524494|ref|XP_004169257.1| PREDICTED:
           probable arabinose 5-phosphate isomerase-like [Cucumis
           sativus]
          Length = 348

 Score =  100 bits (249), Expect = 1e-19
 Identities = 54/96 (56%), Positives = 68/96 (70%), Gaps = 3/96 (3%)
 Frame = +3

Query: 105 TPINSKDLINVVNSQKNHLNFFFQNLDVSQTLNFTQTLLDAKGKVFFTGVGESEYVARKI 284
           T IN   L+N+  SQ+NHLNFFFQNLD+SQTL FT TLL++ G +FF+GVG+S +VARKI
Sbjct: 25  TSINESTLLNLFKSQQNHLNFFFQNLDLSQTLKFTATLLNSPGTIFFSGVGKSGFVARKI 84

Query: 285 SLTLGLLRVQSEFISHDD---GYTNTLSKSDVLVFF 383
           S TL  L ++S F+S  D   G    L+  DVLV F
Sbjct: 85  SQTLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMF 120


>ref|XP_002532039.1| Polysialic acid capsule expression protein kpsF, putative [Ricinus
           communis] gi|223528309|gb|EEF30355.1| Polysialic acid
           capsule expression protein kpsF, putative [Ricinus
           communis]
          Length = 340

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 50/99 (50%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
 Frame = +3

Query: 96  KTLTPINSKDLINVVNSQKNHLNFFFQNLDVSQTLNFTQTLLDAKGKVFFTGVGESEYVA 275
           K+ + I+   L+N+  SQ+NHLN+FFQNLD+SQTL+FTQTLL+++G + FTGVG+S +VA
Sbjct: 14  KSQSQIDQNTLLNLFKSQQNHLNYFFQNLDISQTLSFTQTLLNSRGTILFTGVGKSGFVA 73

Query: 276 RKISLTLGLLRVQSEFISHDD---GYTNTLSKSDVLVFF 383
            KIS TL  L +++ F+S  D   G    L+  D+LV F
Sbjct: 74  NKISQTLVSLGIRAGFLSPVDALHGDIGILTPRDILVMF 112


>ref|XP_002339493.1| predicted protein [Populus trichocarpa] gi|222875267|gb|EEF12398.1|
           predicted protein [Populus trichocarpa]
          Length = 219

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
 Frame = +3

Query: 111 INSKDLINVVNSQKNHLNFFFQNLDVSQTLNFTQTLLDAKGKVFFTGVGESEYVARKISL 290
           I+   L+N+  SQ+NHLN+FF+NLD+SQTL FTQTLL   G +FF+GVG+S +VA KIS 
Sbjct: 20  IDQTTLLNLFKSQQNHLNYFFRNLDLSQTLTFTQTLLHCNGTIFFSGVGKSGFVANKISQ 79

Query: 291 TLGLLRVQSEFISHDD---GYTNTLSKSDVLVFF 383
           TL  L +++ F+S  D   G    LS SD+LV F
Sbjct: 80  TLISLGIRAGFLSPLDALHGDIGALSASDILVLF 113


>ref|XP_002306858.1| predicted protein [Populus trichocarpa] gi|222856307|gb|EEE93854.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 50/100 (50%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
 Frame = +3

Query: 93  DKTLTPINSKDLINVVNSQKNHLNFFFQNLDVSQTLNFTQTLLDAKGKVFFTGVGESEYV 272
           D     I+   L+N+  SQ+NHLN+FFQNL++SQ L FTQTLL+  G +FF+GVG+S +V
Sbjct: 14  DAKFQQIDQTTLLNLFKSQQNHLNYFFQNLNLSQALTFTQTLLNCNGTIFFSGVGKSGFV 73

Query: 273 ARKISLTLGLLRVQSEFISHDD---GYTNTLSKSDVLVFF 383
           A KIS TL  L +++ F+S  D   G    LS SD+LV F
Sbjct: 74  ANKISQTLISLGIRAGFLSPVDALHGDIGALSSSDILVLF 113


>ref|XP_002302040.1| predicted protein [Populus trichocarpa] gi|118483855|gb|ABK93818.1|
           unknown [Populus trichocarpa]
           gi|222843766|gb|EEE81313.1| predicted protein [Populus
           trichocarpa]
          Length = 341

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 3/94 (3%)
 Frame = +3

Query: 111 INSKDLINVVNSQKNHLNFFFQNLDVSQTLNFTQTLLDAKGKVFFTGVGESEYVARKISL 290
           I+   L+N+  SQ+NHLN+FF+NLD+SQTL FTQTLL   G +FF+GVG+S +VA KIS 
Sbjct: 20  IDQTTLLNLFKSQQNHLNYFFRNLDLSQTLTFTQTLLHCNGTIFFSGVGKSGFVANKISQ 79

Query: 291 TLGLLRVQSEFISHDD---GYTNTLSKSDVLVFF 383
           TL  L +++ F+S  D   G    LS SD+LV F
Sbjct: 80  TLISLGIRAGFLSPLDALHGDIGALSASDILVLF 113


Top