BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023945
         (812 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306264.1| chromatin remodeling complex subunit [Populu...   424   e-116
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...   416   e-114
ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-...   414   e-113
ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis th...   401   e-110
ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arab...   400   e-109

>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222855713|gb|EEE93260.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1058

 Score =  424 bits (1089), Expect = e-116
 Identities = 209/272 (76%), Positives = 241/272 (88%), Gaps = 2/272 (0%)
 Frame = +2

Query: 2    IIISGTPIQNNLKELWALFSFCCPQLLGDKKEFKDRYEHAILRGNDKNATDREKRIGSTV 181
            I+ISGTPIQNNLKELWALF+FCCP LLGD K FK+ YEH ILRGN+KNA+DREKRIGSTV
Sbjct: 530  IVISGTPIQNNLKELWALFNFCCPGLLGDNKWFKETYEHPILRGNEKNASDREKRIGSTV 589

Query: 182  AKDLRERIKPYFLRRLKNEVFCDDEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSEL 361
            AK+LRERI+PYFLRR+KNEVF +D+AT + KLS+KNEIIVWLRLT CQRQLYEAFL SE+
Sbjct: 590  AKELRERIQPYFLRRMKNEVFKEDDAT-TAKLSRKNEIIVWLRLTACQRQLYEAFLRSEI 648

Query: 362  VLSSFDKSPLAALTVLKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSILERMALHLANP 541
            VLS+FD SPLAALT+LKKICDHP LLTKRAAED+LEGME+M+N +D ++ E++A+HLA+ 
Sbjct: 649  VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDAAVAEKLAMHLADV 708

Query: 542  TD--TEDFQNVIDNVSCKISFILSLLDNLIPEGHNVLIFSQTRKMLNFVQEAIISKGYRF 715
             D    DFQ   DN+SCKISFILSLLDNLIPEGHNVLIFSQTRKMLN +QE+++S GY F
Sbjct: 709  ADRTDTDFQEKHDNISCKISFILSLLDNLIPEGHNVLIFSQTRKMLNLIQESLVSNGYEF 768

Query: 716  LRIDGTTKISDREKIVKDFQEGEGAPIFLLTS 811
            +RIDGTTK +DR KIV DFQEG GAPIFLLTS
Sbjct: 769  IRIDGTTKATDRTKIVSDFQEGNGAPIFLLTS 800


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222852831|gb|EEE90378.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1108

 Score =  416 bits (1068), Expect = e-114
 Identities = 204/278 (73%), Positives = 241/278 (86%), Gaps = 8/278 (2%)
 Frame = +2

Query: 2    IIISGTPIQNNLKELWALFSFCCPQLLGDKKEFKDRYEHAILRGNDKNATDREKRIGSTV 181
            I+ISGTPIQNNLKELWALF+FCCP LLGD K FK  YEH ILRGN+KNA+DREKRIGSTV
Sbjct: 552  IVISGTPIQNNLKELWALFNFCCPDLLGDNKWFKQTYEHPILRGNEKNASDREKRIGSTV 611

Query: 182  AKDLRERIKPYFLRRLKNEVFCDDEATNSVKLSKKNEIIVWLRLTQCQ--------RQLY 337
            A +LRERI+PYFLRR+KNEVF +D+AT + KLS+KNEIIVWLRLT CQ        RQLY
Sbjct: 612  AMELRERIQPYFLRRMKNEVFKEDDATTA-KLSRKNEIIVWLRLTTCQQLRPLLCQRQLY 670

Query: 338  EAFLNSELVLSSFDKSPLAALTVLKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSILER 517
            EAFL SE+VLS+FD SPLAALT+LKKICDHP LLTKRAAED+LEGME+M+N +D+++ E+
Sbjct: 671  EAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDLLEGMESMLNPEDVAVAEK 730

Query: 518  MALHLANPTDTEDFQNVIDNVSCKISFILSLLDNLIPEGHNVLIFSQTRKMLNFVQEAII 697
            +A+H+A+  +  DFQ   D++SCKISF+LSLLDNLIPEGHNVLIFSQTRKMLN ++E+++
Sbjct: 731  LAMHVADVAERTDFQEKHDSISCKISFVLSLLDNLIPEGHNVLIFSQTRKMLNLIEESLV 790

Query: 698  SKGYRFLRIDGTTKISDREKIVKDFQEGEGAPIFLLTS 811
            S GY FLRIDGTTK++DR KIV DFQEG GAPIFLLTS
Sbjct: 791  SNGYEFLRIDGTTKVTDRAKIVDDFQEGNGAPIFLLTS 828


>ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
            gi|296088517|emb|CBI37508.3| unnamed protein product
            [Vitis vinifera]
          Length = 1043

 Score =  414 bits (1064), Expect = e-113
 Identities = 202/270 (74%), Positives = 235/270 (87%)
 Frame = +2

Query: 2    IIISGTPIQNNLKELWALFSFCCPQLLGDKKEFKDRYEHAILRGNDKNATDREKRIGSTV 181
            I++SGTPIQNNLKELWALFSFCCP+LLGDK  FK +YE  ILRGNDKNA+DREK I S V
Sbjct: 493  IVVSGTPIQNNLKELWALFSFCCPELLGDKNWFKVKYESPILRGNDKNASDREKHISSRV 552

Query: 182  AKDLRERIKPYFLRRLKNEVFCDDEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSEL 361
            AK+LRERI+PYFLRRLKNEVF +D+A+ + KLSKKNEIIVWLRLT CQRQLYEAFLNSE+
Sbjct: 553  AKELRERIQPYFLRRLKNEVFHEDDASETAKLSKKNEIIVWLRLTSCQRQLYEAFLNSEI 612

Query: 362  VLSSFDKSPLAALTVLKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSILERMALHLANP 541
            VLS+FD SPLAA+T+LKKICDHP LLTKRA EDVLEGM++M+NQ+DL +  ++A+HLA  
Sbjct: 613  VLSAFDGSPLAAITILKKICDHPLLLTKRAVEDVLEGMDSMLNQEDLGMASKLAMHLATA 672

Query: 542  TDTEDFQNVIDNVSCKISFILSLLDNLIPEGHNVLIFSQTRKMLNFVQEAIISKGYRFLR 721
             + +DF    DNVS K+SFIL+LLD LIPEGHNVLIFSQTRKMLN ++E +IS GY+FLR
Sbjct: 673  YERDDFLEKNDNVSSKMSFILALLDTLIPEGHNVLIFSQTRKMLNLIEELLISNGYKFLR 732

Query: 722  IDGTTKISDREKIVKDFQEGEGAPIFLLTS 811
            IDGTTK +DR KIV DFQ+G GAPIFLLTS
Sbjct: 733  IDGTTKANDRVKIVNDFQDGVGAPIFLLTS 762


>ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis thaliana]
            gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5
            [Arabidopsis thaliana] gi|22655364|gb|AAM98274.1|
            At5g63950/MBM17_5 [Arabidopsis thaliana]
            gi|332010436|gb|AED97819.1| protein chromatin remodeling
            24 [Arabidopsis thaliana]
          Length = 1090

 Score =  401 bits (1031), Expect = e-110
 Identities = 199/270 (73%), Positives = 233/270 (86%)
 Frame = +2

Query: 2    IIISGTPIQNNLKELWALFSFCCPQLLGDKKEFKDRYEHAILRGNDKNATDREKRIGSTV 181
            IIISGTPIQNNLKELWALF+F CP LLGDK  FK  YEH ILRG DKNATDRE+RIGSTV
Sbjct: 540  IIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTV 599

Query: 182  AKDLRERIKPYFLRRLKNEVFCDDEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSEL 361
            AK+LRE I+P+FLRRLK+EVF DD AT+  KLSKK+EI+VWLRLT CQRQLYEAFLNSE+
Sbjct: 600  AKNLREHIQPFFLRRLKSEVFGDDGATS--KLSKKDEIVVWLRLTACQRQLYEAFLNSEI 657

Query: 362  VLSSFDKSPLAALTVLKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSILERMALHLANP 541
            VLS+FD SPLAALT+LKKICDHP LLTKRAAEDVLEGM++ + Q++  + ER+A+H+A+ 
Sbjct: 658  VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTQEEAGVAERLAMHIADN 717

Query: 542  TDTEDFQNVIDNVSCKISFILSLLDNLIPEGHNVLIFSQTRKMLNFVQEAIISKGYRFLR 721
             DT+DFQ   D++SCK+SFI+SLL+NLIPEGH VLIFSQTRKMLN +Q+++ S GY FLR
Sbjct: 718  VDTDDFQTKNDSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLR 777

Query: 722  IDGTTKISDREKIVKDFQEGEGAPIFLLTS 811
            IDGTTK  DR K V++FQEG  APIFLLTS
Sbjct: 778  IDGTTKAPDRLKTVEEFQEGHVAPIFLLTS 807


>ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp.
            lyrata] gi|297312419|gb|EFH42843.1| hypothetical protein
            ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  400 bits (1029), Expect = e-109
 Identities = 199/270 (73%), Positives = 232/270 (85%)
 Frame = +2

Query: 2    IIISGTPIQNNLKELWALFSFCCPQLLGDKKEFKDRYEHAILRGNDKNATDREKRIGSTV 181
            IIISGTPIQNNLKELWALF+F CP LLGDK  FK  YEH ILRG DKNATDRE+RIGSTV
Sbjct: 547  IIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYILRGTDKNATDREQRIGSTV 606

Query: 182  AKDLRERIKPYFLRRLKNEVFCDDEATNSVKLSKKNEIIVWLRLTQCQRQLYEAFLNSEL 361
            AK+LRE I+P+FLRRLK+EVF DD AT+  KLSKK+EI+VWLRLT CQRQLYEAFLNSE+
Sbjct: 607  AKNLREHIQPFFLRRLKSEVFGDDGATS--KLSKKDEIVVWLRLTACQRQLYEAFLNSEI 664

Query: 362  VLSSFDKSPLAALTVLKKICDHPYLLTKRAAEDVLEGMETMVNQDDLSILERMALHLANP 541
            VLS+FD SPLAALT+LKKICDHP LLTKRAAEDVLEGM++ +  ++  + ER+A+H+A+ 
Sbjct: 665  VLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSTLTPEEAGVAERLAMHIADN 724

Query: 542  TDTEDFQNVIDNVSCKISFILSLLDNLIPEGHNVLIFSQTRKMLNFVQEAIISKGYRFLR 721
             DT+DFQ   D++SCK+SFI+SLLDNLIPEGH VLIFSQTRKMLN +Q+++ S GY FLR
Sbjct: 725  VDTDDFQTKNDSISCKLSFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLR 784

Query: 722  IDGTTKISDREKIVKDFQEGEGAPIFLLTS 811
            IDGTTK  DR K V++FQEG  APIFLLTS
Sbjct: 785  IDGTTKAPDRLKTVEEFQEGHVAPIFLLTS 814