BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023932
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]    69   3e-10
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               64   1e-08
emb|CCH50966.1| T4.5 [Malus x robusta]                                 59   3e-07
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [...    58   9e-07
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    54   1e-06

>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
 Frame = +3

Query: 54  GNSKGLSI*NTGSIVVSTPSSSFHLNNILHVPRIS*NLFSAHQFTSDNNCSRIIQIN--L 227
           GN  GL + NTGS   +   S+FHLN ILH P+ + NL S +QF  DNNC  I+  N  +
Sbjct: 353 GNGSGLQVLNTGSTTFNFGQSNFHLNKILHCPQAATNLISINQFCLDNNCYFILTANGFV 412

Query: 228 LRRTISEKIVFQGPQKDGCYPI 293
           ++  ++ +I+ QG  ++G YP+
Sbjct: 413 VKENLTGRILLQGVVENGLYPL 434


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
 Frame = +3

Query: 57  NSKGLSI*NTGSIVVSTPSSSFHLNNILHVPRIS*NLFSAHQFTSDNNCSRIIQIN--LL 230
           +  GLSI + GS  +++ SSSFHLN+ILH P  S NL S ++FT DN+C  I   N   +
Sbjct: 382 SDSGLSIKHIGSSKLNSSSSSFHLNDILHCPSASTNLLSVYKFTIDNHCYFIFYPNYFCV 441

Query: 231 RRTISEKIVFQGPQKDGCYPIKF 299
           +   + K+++ G  ++G YP +F
Sbjct: 442 KDLKTGKMLYHGKSENGLYPFRF 464


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +3

Query: 54  GNSKGLSI*NTGSIVVSTPSSSFHLNNILHVPRIS*NLFSAHQFTSDNNCSRIIQ-INLL 230
           G+ KGL I +TGS ++ T  ++F LN++L VP+ S NL S ++F  DN C          
Sbjct: 623 GDGKGLCISHTGSALIRTKHATFRLNDVLLVPQASHNLLSVYKFVYDNWCYLTFDPFGFY 682

Query: 231 RRTISE-KIVFQGPQKDGCYPIKFN 302
            + +S  K++FQGP + G YP  +N
Sbjct: 683 VKDLSTGKMLFQGPSEGGLYPFYWN 707


>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
           Japonica Group] gi|31431217|gb|AAP53032.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1042

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
 Frame = +3

Query: 51  SGNSKGLSI*NTGSIVVSTPSSSFHLNNILHVPRIS*NLFSAHQFTSDNNCSRIIQIN-- 224
           + +  G+ I + G  +V TP+   HLNN+LHVP+ + NL SA +  SDN  S  ++I+  
Sbjct: 250 TASGAGMKIKHIGHAIVHTPTRPLHLNNVLHVPQAAKNLISATKLASDN--SVFVEIHSK 307

Query: 225 --LLRRTISEKIVFQGPQKDGCYPI 293
             L++   +   V +GP++ G YP+
Sbjct: 308 YFLIKDRTTRSTVLKGPRRHGLYPL 332


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 53.5 bits (127), Expect(2) = 1e-06
 Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
 Frame = +3

Query: 54  GNSKGLSI*NTGSIVVSTPSSSFHLNNILHVPRIS*NLFSAHQFTSDNNCSRIIQIN--- 224
           G+  GL I ++GS+ +S P+  F + + L VP I+ NL S H FT  NN   I++ +   
Sbjct: 329 GDGSGLPITHSGSLTLSFPNRKFQVEDTLCVPTINKNLISVHHFTKQNNV--ILEFHPTY 386

Query: 225 -LLRRTISEKIVFQGPQKDGCYPI 293
            L++   + +I+ QGP ++G YP+
Sbjct: 387 FLVKDRRTGEILLQGPCENGVYPM 410



 Score = 23.9 bits (50), Expect(2) = 1e-06
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 1   LSNLSVHSEYTVDD*VLVG 57
           +SNL  HSEY   D V++G
Sbjct: 311 VSNLQFHSEYDGTDEVIIG 329