BLASTX nr result

ID: Cimicifuga21_contig00023840 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023840
         (703 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524078.1| ring finger protein, putative [Ricinus commu...   181   2e-43
ref|XP_002323373.1| predicted protein [Populus trichocarpa] gi|2...   174   2e-41
ref|XP_004143342.1| PREDICTED: putative RING-H2 finger protein A...   171   1e-40
ref|XP_002308329.1| predicted protein [Populus trichocarpa] gi|2...   171   2e-40
ref|XP_003520719.1| PREDICTED: RING-H2 finger protein ATL70-like...   167   2e-39

>ref|XP_002524078.1| ring finger protein, putative [Ricinus communis]
           gi|223536646|gb|EEF38288.1| ring finger protein,
           putative [Ricinus communis]
          Length = 172

 Score =  181 bits (458), Expect = 2e-43
 Identities = 95/171 (55%), Positives = 119/171 (69%), Gaps = 11/171 (6%)
 Frame = -2

Query: 639 MNNT---GGEL-TERINGFGYLIGISVGIIALVLTISLGSYFCTRS-----LASQTQLQE 487
           MNNT   GG L +  I GFGY IG+S+GI+ L+ TI+L SYFCTR+      + QT+ + 
Sbjct: 1   MNNTSSGGGFLGSNDIGGFGYGIGVSIGILLLITTITLASYFCTRNHQQQQQSMQTRRRN 60

Query: 486 RSA-PPQNTTPSIPAEIGLDETTLQSYPTLLYSDAKSDNKNITS-CCTICLSDYKNDDML 313
           RS  PP +    I  E+G+DE TL++YP LLYS AK  N + T+ CC+ICL+DYK+ DML
Sbjct: 61  RSEEPPDDRLQDIVVEVGIDEATLKNYPKLLYSQAKLHNTDTTATCCSICLADYKSTDML 120

Query: 312 RVLPDCGHPFHLTCVDPWLRMHPTCPVCRNXXXXXXXXXXLAEVVPLAHQQ 160
           R+LPDCGH FHL CVDPWLR+HPTCPVCRN          LAEVVPLA ++
Sbjct: 121 RLLPDCGHLFHLKCVDPWLRLHPTCPVCRNSPLPTPLSTPLAEVVPLASRR 171


>ref|XP_002323373.1| predicted protein [Populus trichocarpa] gi|222868003|gb|EEF05134.1|
           predicted protein [Populus trichocarpa]
          Length = 154

 Score =  174 bits (440), Expect = 2e-41
 Identities = 88/151 (58%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
 Frame = -2

Query: 615 TERINGFGYLIGISVGIIALVLTISLGSYFCTRSLASQTQLQER-SAPPQNTTPSIPAEI 439
           +  I GFGY IG+S+GI+ L+ TI+L SYFC R+  +    Q R SA  Q    S   EI
Sbjct: 4   SNNIGGFGYGIGVSIGILLLITTITLASYFCARNQQTSVPSQGRNSADQQLNLQSFVVEI 63

Query: 438 GLDETTLQSYPTLLYSDAKSDNKNITS-CCTICLSDYKNDDMLRVLPDCGHPFHLTCVDP 262
           GLDE TL+SYPTLLYS+AK    + TS CC+ICL+DYK+ D LR+LPDCGH FHL CVDP
Sbjct: 64  GLDEATLKSYPTLLYSEAKLHKTDSTSTCCSICLADYKSTDKLRLLPDCGHLFHLKCVDP 123

Query: 261 WLRMHPTCPVCRNXXXXXXXXXXLAEVVPLA 169
           WLR+HPTCPVCR           LAEVVPLA
Sbjct: 124 WLRLHPTCPVCRTSPLPTPLATPLAEVVPLA 154


>ref|XP_004143342.1| PREDICTED: putative RING-H2 finger protein ATL71-like [Cucumis
           sativus]
          Length = 172

 Score =  171 bits (433), Expect = 1e-40
 Identities = 90/173 (52%), Positives = 114/173 (65%), Gaps = 13/173 (7%)
 Frame = -2

Query: 639 MNN----TGGELTE-RINGFGYLIGISVGIIALVLTISLGSYFCTRSLASQTQLQERSAP 475
           MNN    TGG L+   I GFGY IG+S+G++ L+ TI L SY+CTR+  S + +Q    P
Sbjct: 1   MNNGTAETGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVVQR--TP 58

Query: 474 PQNTTP-------SIPAEIGLDETTLQSYPTLLYSDAK-SDNKNITSCCTICLSDYKNDD 319
           P  + P       S+  +IGLD+ T+ SYP LLYS+AK   N +  SCC+ICL+DYKN D
Sbjct: 59  PNRSPPQAVGEMDSVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSD 118

Query: 318 MLRVLPDCGHPFHLTCVDPWLRMHPTCPVCRNXXXXXXXXXXLAEVVPLAHQQ 160
           +LR+LPDCGH FHL CVDPWLR+HPTCPVCR           LAE VPLA ++
Sbjct: 119 VLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRR 171


>ref|XP_002308329.1| predicted protein [Populus trichocarpa] gi|222854305|gb|EEE91852.1|
           predicted protein [Populus trichocarpa]
          Length = 146

 Score =  171 bits (432), Expect = 2e-40
 Identities = 86/146 (58%), Positives = 101/146 (69%), Gaps = 2/146 (1%)
 Frame = -2

Query: 600 GFGYLIGISVGIIALVLTISLGSYFCTRSLASQTQLQERS-APPQNTTPSIPAEIGLDET 424
           GFGY IGIS+GI+ L+ TI+L SYFCTR+  +    Q R+ A  Q    +   +IGLDE 
Sbjct: 1   GFGYGIGISIGILLLITTITLTSYFCTRNQLASVPTQARNVADQQLNLQNFVVDIGLDEA 60

Query: 423 TLQSYPTLLYSDAKSDNKNITS-CCTICLSDYKNDDMLRVLPDCGHPFHLTCVDPWLRMH 247
           TL SYPTLLYS+AK      T+ CC+ICL+DYKN D LR+LPDCGH FHL CVDPWLR+H
Sbjct: 61  TLNSYPTLLYSEAKLHKTGSTATCCSICLADYKNTDKLRLLPDCGHLFHLRCVDPWLRLH 120

Query: 246 PTCPVCRNXXXXXXXXXXLAEVVPLA 169
           PTCPVCR           LAEVVPLA
Sbjct: 121 PTCPVCRTSPLPSPLATPLAEVVPLA 146


>ref|XP_003520719.1| PREDICTED: RING-H2 finger protein ATL70-like [Glycine max]
          Length = 171

 Score =  167 bits (423), Expect = 2e-39
 Identities = 86/164 (52%), Positives = 111/164 (67%), Gaps = 4/164 (2%)
 Frame = -2

Query: 639 MNNTGGELTERINGFGYLIGISVGIIALVLTISLGSYFCTRS---LASQTQLQERSAPPQ 469
           +N+ G   +  I+G+ Y IGIS+GI+ L++TI+L SYFCTRS    A  T+ + R+    
Sbjct: 7   VNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRSQVSFAPATRNRRRTPNVL 66

Query: 468 NTTPSIPAEIGLDETTLQSYPTLLYSDAKSDNKNITS-CCTICLSDYKNDDMLRVLPDCG 292
               SI  ++ LDE T+ SYPTLLYS+AK    + T+ CC+ICL+DYK  DMLR+LPDCG
Sbjct: 67  EPQHSI-VDVSLDEATILSYPTLLYSEAKLKKSDSTATCCSICLADYKGTDMLRMLPDCG 125

Query: 291 HPFHLTCVDPWLRMHPTCPVCRNXXXXXXXXXXLAEVVPLAHQQ 160
           H FHL C+DPWLR+HPTCPVCR           LAEVVPLA +Q
Sbjct: 126 HQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQ 169


Top