BLASTX nr result
ID: Cimicifuga21_contig00023471
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00023471
(1925 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22748.3| unnamed protein product [Vitis vinifera] 539 e-151
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi... 539 e-151
ref|XP_002510791.1| pentatricopeptide repeat-containing protein,... 521 e-145
ref|XP_002894516.1| pentatricopeptide repeat-containing protein ... 513 e-143
ref|NP_191564.1| pentatricopeptide repeat-containing protein [Ar... 513 e-143
>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 539 bits (1389), Expect = e-151
Identities = 249/405 (61%), Positives = 319/405 (78%)
Frame = +1
Query: 679 FFEDLRFEADRVIEVLLQNRLGYDTKLALDELQLRVSSYLVREVLTRILRSIDHSIKDNC 858
+F+++R +A RV+++L Q+ G+ TK ALDELQ+RVS LVREVL IL++++++ K+ C
Sbjct: 113 YFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERC 172
Query: 859 AKLGLKFFVWSGEQRNYNHTTNTYHLIMKILADCEHYHAMWNFFDAMTEKGFPTTARTFN 1038
AKLG KFF+WSG+Q NY HT N YHLIMKI A+ + + AMW D M E+GFP TARTF
Sbjct: 173 AKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQ 232
Query: 1039 ILICTCGEAGLARKVVERFIMSKTFNFRPFKHSFNAILHSLLVINQYRLIEWVYKQMILQ 1218
ILICTCGEAGLAR+ VERF+ SK FN+RPFKHS+NAILH LL + QY+L+EWVY+QM+L+
Sbjct: 233 ILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLE 292
Query: 1219 NYSPDILTYNVLMWTKYKLGKKDELYALLDQLCKKGFSPDLHTYTILLHVLGRTNNPIGA 1398
+YSPDILTYN++M TKY+LGK D+ + LL++L GFSPD HT+ ILLH+LG+ N P+ A
Sbjct: 293 DYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAA 352
Query: 1399 LNCMNHMREVGCEPRVIHFTSLIDGLSRFGNLEACKHFFDEMVRKGCTPDVVCYTVMITG 1578
L+ +NHM+EVG +P V+HFT+LIDGLSR GNL+ACK+FFDEM++ GC PDVVCYTVMITG
Sbjct: 353 LDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITG 412
Query: 1579 YVVARELEKAQAMFEEMIIKGQLPNVFTYNAMIRGLCDAQKFEEACYLLRDMESRGCKPN 1758
Y+VA ELE AQ +FEEM +KGQLPNVFTYN+MIRGLC A+KFEEA +L++MESRGC PN
Sbjct: 413 YIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPN 472
Query: 1759 FVVYNTXXXXXXXXXXXXXXXIIMDEMQHKRHYMYLLEKFKRYSK 1893
F+VYNT ++ M K Y++LL KFK Y +
Sbjct: 473 FLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRR 517
>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like
[Vitis vinifera]
Length = 514
Score = 539 bits (1389), Expect = e-151
Identities = 249/405 (61%), Positives = 319/405 (78%)
Frame = +1
Query: 679 FFEDLRFEADRVIEVLLQNRLGYDTKLALDELQLRVSSYLVREVLTRILRSIDHSIKDNC 858
+F+++R +A RV+++L Q+ G+ TK ALDELQ+RVS LVREVL IL++++++ K+ C
Sbjct: 109 YFDNMRLDASRVLQILQQDCPGFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERC 168
Query: 859 AKLGLKFFVWSGEQRNYNHTTNTYHLIMKILADCEHYHAMWNFFDAMTEKGFPTTARTFN 1038
AKLG KFF+WSG+Q NY HT N YHLIMKI A+ + + AMW D M E+GFP TARTF
Sbjct: 169 AKLGYKFFMWSGQQENYRHTVNAYHLIMKIFAESDEFKAMWRLVDEMIEQGFPVTARTFQ 228
Query: 1039 ILICTCGEAGLARKVVERFIMSKTFNFRPFKHSFNAILHSLLVINQYRLIEWVYKQMILQ 1218
ILICTCGEAGLAR+ VERF+ SK FN+RPFKHS+NAILH LL + QY+L+EWVY+QM+L+
Sbjct: 229 ILICTCGEAGLARRAVERFVKSKNFNYRPFKHSYNAILHCLLCLKQYKLVEWVYQQMLLE 288
Query: 1219 NYSPDILTYNVLMWTKYKLGKKDELYALLDQLCKKGFSPDLHTYTILLHVLGRTNNPIGA 1398
+YSPDILTYN++M TKY+LGK D+ + LL++L GFSPD HT+ ILLH+LG+ N P+ A
Sbjct: 289 DYSPDILTYNIVMCTKYRLGKLDQFHRLLEELGTNGFSPDFHTFNILLHLLGKGNKPLAA 348
Query: 1399 LNCMNHMREVGCEPRVIHFTSLIDGLSRFGNLEACKHFFDEMVRKGCTPDVVCYTVMITG 1578
L+ +NHM+EVG +P V+HFT+LIDGLSR GNL+ACK+FFDEM++ GC PDVVCYTVMITG
Sbjct: 349 LDLLNHMKEVGFDPSVLHFTTLIDGLSRAGNLDACKYFFDEMIKLGCMPDVVCYTVMITG 408
Query: 1579 YVVARELEKAQAMFEEMIIKGQLPNVFTYNAMIRGLCDAQKFEEACYLLRDMESRGCKPN 1758
Y+VA ELE AQ +FEEM +KGQLPNVFTYN+MIRGLC A+KFEEA +L++MESRGC PN
Sbjct: 409 YIVAGELEMAQGLFEEMTVKGQLPNVFTYNSMIRGLCMAEKFEEARSMLKEMESRGCNPN 468
Query: 1759 FVVYNTXXXXXXXXXXXXXXXIIMDEMQHKRHYMYLLEKFKRYSK 1893
F+VYNT ++ M K Y++LL KFK Y +
Sbjct: 469 FLVYNTLVGNLRNAGKLKEAHEVIRHMVDKGQYVHLLSKFKGYRR 513
>ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549906|gb|EEF51393.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 475
Score = 521 bits (1342), Expect = e-145
Identities = 249/401 (62%), Positives = 304/401 (75%)
Frame = +1
Query: 670 RRRFFEDLRFEADRVIEVLLQNRLGYDTKLALDELQLRVSSYLVREVLTRILRSIDHSIK 849
R+ FFE++R +A RV+++L Q+ G+D K AL EL LRVS LVREVL ILR+I K
Sbjct: 71 RKWFFENVRIDAARVLDILRQDGPGFDAKAALSELDLRVSGLLVREVLAGILRNIGIDNK 130
Query: 850 DNCAKLGLKFFVWSGEQRNYNHTTNTYHLIMKILADCEHYHAMWNFFDAMTEKGFPTTAR 1029
CAKLG KFF+WS +Q NY HT N YHLIMKI ADCE + AMW D M E GFPTTAR
Sbjct: 131 TRCAKLGYKFFIWSSQQENYRHTANNYHLIMKIFADCEEFKAMWRLLDEMVENGFPTTAR 190
Query: 1030 TFNILICTCGEAGLARKVVERFIMSKTFNFRPFKHSFNAILHSLLVINQYRLIEWVYKQM 1209
TFNILICTCG AGLARKVVERFI SKTFN+RPFKHS+NAIL SLL I +Y+LIEWV++QM
Sbjct: 191 TFNILICTCGGAGLARKVVERFIKSKTFNYRPFKHSYNAILLSLLAIREYKLIEWVHQQM 250
Query: 1210 ILQNYSPDILTYNVLMWTKYKLGKKDELYALLDQLCKKGFSPDLHTYTILLHVLGRTNNP 1389
+++ Y PD LTYN+LM KY+LGK + LLD++ + GFSPD HTY ILLHVLG+ N P
Sbjct: 251 LVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGKGNKP 310
Query: 1390 IGALNCMNHMREVGCEPRVIHFTSLIDGLSRFGNLEACKHFFDEMVRKGCTPDVVCYTVM 1569
I AL +NHM+E+G +P ++HFT+LIDGLSR GNL+AC +FFDEM++ G PDVVCYTVM
Sbjct: 311 IAALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVM 370
Query: 1570 ITGYVVARELEKAQAMFEEMIIKGQLPNVFTYNAMIRGLCDAQKFEEACYLLRDMESRGC 1749
ITGY+VA ELEKA+ +F+EMI +GQLPNVFTYN+MIRGLC A KFEEA +L++M SRGC
Sbjct: 371 ITGYIVAGELEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGSRGC 430
Query: 1750 KPNFVVYNTXXXXXXXXXXXXXXXIIMDEMQHKRHYMYLLE 1872
KPNF+VYNT ++ EM Y++ L+
Sbjct: 431 KPNFLVYNTLVNNLRNAGKLSEAREVIKEMAENGQYVHRLK 471
>ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297340358|gb|EFH70775.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 477
Score = 513 bits (1322), Expect = e-143
Identities = 245/408 (60%), Positives = 303/408 (74%)
Frame = +1
Query: 670 RRRFFEDLRFEADRVIEVLLQNRLGYDTKLALDELQLRVSSYLVREVLTRILRSIDHSIK 849
RRRF E + A RV++ L Q+ G++TK ALD+L + +S LVREVL ILR++ + K
Sbjct: 69 RRRFMESAKLGASRVLDTLQQDCPGFNTKSALDDLNVTISGLLVREVLVGILRTLSYDNK 128
Query: 850 DNCAKLGLKFFVWSGEQRNYNHTTNTYHLIMKILADCEHYHAMWNFFDAMTEKGFPTTAR 1029
CAKL KFFVW G Q N+ HT N YHL+MKI A+C Y AM D M + G+PTTA
Sbjct: 129 TRCAKLAYKFFVWFGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEMIKDGYPTTAC 188
Query: 1030 TFNILICTCGEAGLARKVVERFIMSKTFNFRPFKHSFNAILHSLLVINQYRLIEWVYKQM 1209
TFN+LICTCGEAGLAR VVE+FI SKTFN+RP+KHS+NAILHSLL + QY+LI+WVY+QM
Sbjct: 189 TFNLLICTCGEAGLARDVVEQFIKSKTFNYRPYKHSYNAILHSLLGVKQYKLIDWVYEQM 248
Query: 1210 ILQNYSPDILTYNVLMWTKYKLGKKDELYALLDQLCKKGFSPDLHTYTILLHVLGRTNNP 1389
+ +SPD+LTYN++M+ ++LGK D LY LLD++ K GFSPDL+TY ILLH L N P
Sbjct: 249 LEDGFSPDVLTYNIVMFANFRLGKTDRLYRLLDEMVKDGFSPDLYTYNILLHHLATGNKP 308
Query: 1390 IGALNCMNHMREVGCEPRVIHFTSLIDGLSRFGNLEACKHFFDEMVRKGCTPDVVCYTVM 1569
+ ALN + HMREVG EP VIHFT+L+DGLSR G LEACK+F DEMV+ GCTPDVVCYTVM
Sbjct: 309 LAALNLLTHMREVGVEPGVIHFTTLVDGLSRAGKLEACKYFMDEMVKVGCTPDVVCYTVM 368
Query: 1570 ITGYVVARELEKAQAMFEEMIIKGQLPNVFTYNAMIRGLCDAQKFEEACYLLRDMESRGC 1749
ITGY+ ELEKA+ MF+EM KGQLPNVFTYN+MIRG C A KF+EAC LL++MESRGC
Sbjct: 369 ITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACSLLKEMESRGC 428
Query: 1750 KPNFVVYNTXXXXXXXXXXXXXXXIIMDEMQHKRHYMYLLEKFKRYSK 1893
PNFVVY+T I+ +M K HY++L+ FK+Y +
Sbjct: 429 NPNFVVYSTLVNNLRNAGKVLEAHEIVKDMVEKGHYVHLISMFKKYRR 476
>ref|NP_191564.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181813|sp|Q9M1D8.1|PP288_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g60050 gi|7076758|emb|CAB75920.1| putative protein
[Arabidopsis thaliana] gi|332646485|gb|AEE80006.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 473
Score = 513 bits (1322), Expect = e-143
Identities = 239/408 (58%), Positives = 304/408 (74%)
Frame = +1
Query: 670 RRRFFEDLRFEADRVIEVLLQNRLGYDTKLALDELQLRVSSYLVREVLTRILRSIDHSIK 849
R RF E A RV+ L + G+++K LDEL +RVS LVREVL ILR++ + K
Sbjct: 66 RSRFLESANHSASRVLVTLQLDESGFNSKSVLDELNVRVSGLLVREVLVGILRNLSYDNK 125
Query: 850 DNCAKLGLKFFVWSGEQRNYNHTTNTYHLIMKILADCEHYHAMWNFFDAMTEKGFPTTAR 1029
CAKL +FF+WSGEQ + HT N+YHL+MKI A+C Y AMW D M + GFPTTAR
Sbjct: 126 ARCAKLAYRFFLWSGEQECFRHTVNSYHLLMKIFAECGEYKAMWRLVDEMVQDGFPTTAR 185
Query: 1030 TFNILICTCGEAGLARKVVERFIMSKTFNFRPFKHSFNAILHSLLVINQYRLIEWVYKQM 1209
TFN+LIC+CGEAGLA++ V +F+ SKTFN+RPFKHS+NAIL+SLL + QY+LIEWVYKQM
Sbjct: 186 TFNLLICSCGEAGLAKQAVVQFMKSKTFNYRPFKHSYNAILNSLLGVKQYKLIEWVYKQM 245
Query: 1210 ILQNYSPDILTYNVLMWTKYKLGKKDELYALLDQLCKKGFSPDLHTYTILLHVLGRTNNP 1389
+ +SPD+LTYN+L+WT Y+LGK D L D++ + GFSPD +TY ILLH+LG+ N P
Sbjct: 246 LEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKP 305
Query: 1390 IGALNCMNHMREVGCEPRVIHFTSLIDGLSRFGNLEACKHFFDEMVRKGCTPDVVCYTVM 1569
+ AL +NHM+EVG +P V+H+T+LIDGLSR GNLEACK+F DEMV+ GC PDVVCYTVM
Sbjct: 306 LAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVM 365
Query: 1570 ITGYVVARELEKAQAMFEEMIIKGQLPNVFTYNAMIRGLCDAQKFEEACYLLRDMESRGC 1749
ITGYVV+ EL+KA+ MF EM +KGQLPNVFTYN+MIRGLC A +F EAC+LL++MESRGC
Sbjct: 366 ITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGC 425
Query: 1750 KPNFVVYNTXXXXXXXXXXXXXXXIIMDEMQHKRHYMYLLEKFKRYSK 1893
PNFVVY+T ++ EM K HY++L+ K +Y +
Sbjct: 426 NPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVHLVPKMMKYRR 473