BLASTX nr result

ID: Cimicifuga21_contig00023390 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023390
         (598 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279561.1| PREDICTED: uncharacterized protein LOC100256...    88   1e-15
ref|XP_003531145.1| PREDICTED: uncharacterized protein LOC100793...    79   6e-13
ref|XP_002524889.1| conserved hypothetical protein [Ricinus comm...    78   1e-12
gb|AFK44604.1| unknown [Medicago truncatula]                           77   2e-12
gb|ACJ85348.1| unknown [Medicago truncatula]                           77   2e-12

>ref|XP_002279561.1| PREDICTED: uncharacterized protein LOC100256054 [Vitis vinifera]
           gi|297734247|emb|CBI15494.3| unnamed protein product
           [Vitis vinifera]
          Length = 420

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 55/137 (40%), Positives = 78/137 (56%), Gaps = 19/137 (13%)
 Frame = -3

Query: 536 MRRVLLNHASSCARHCRSSNTFKPISKSLVLPLNSTQSN---IKFFSSHNP----NPNP- 381
           MRR LL + S C R   S ++ KP +    +  +++ S+    +FFSS N     NP P 
Sbjct: 1   MRRTLLRNVSLCTRTLLSPSSSKPSASPTPISSSASASSAFKFRFFSSENDSSTENPKPL 60

Query: 380 -----------KTSPDVEDVSTRDLKAMINKYYEEDDEEMVPSLLEAILKRKLTNTHEET 234
                      + S DV DVS ++LK  I KY++  DEE +PS+LEAI+ RKL   HE+T
Sbjct: 61  EETSLAQPQKKEVSIDVPDVSNKELKMRIEKYFK-GDEEALPSILEAIMARKLAGKHEDT 119

Query: 233 DDELVDQLQRNPSDALK 183
           DDEL+D+L+  P D +K
Sbjct: 120 DDELMDELRLQPLDDVK 136


>ref|XP_003531145.1| PREDICTED: uncharacterized protein LOC100793641 [Glycine max]
          Length = 390

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 44/115 (38%), Positives = 70/115 (60%)
 Frame = -3

Query: 536 MRRVLLNHASSCARHCRSSNTFKPISKSLVLPLNSTQSNIKFFSSHNPNPNPKTSPDVED 357
           MRR L+ + S   R+         +  S +    S++   + FSS   N NP   P ++D
Sbjct: 1   MRRTLVRNGSLYTRNL--------LHHSALALAASSRPQFRLFSS---NENPPPVPQIDD 49

Query: 356 VSTRDLKAMINKYYEEDDEEMVPSLLEAILKRKLTNTHEETDDELVDQLQRNPSD 192
           V+ ++LKA I  Y++  DE+++PS++EAILKRKL+  HE+TDDEL+++L+  P D
Sbjct: 50  VNNKELKAQIETYFK-GDEKVLPSIMEAILKRKLSGNHEDTDDELMEELRMRPLD 103


>ref|XP_002524889.1| conserved hypothetical protein [Ricinus communis]
           gi|223535852|gb|EEF37513.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 415

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 15/133 (11%)
 Frame = -3

Query: 536 MRRVLLNHASSCARHCRSSNTFKPISKSLVLPLNSTQSNIKFFSSHNPNPNPKTSPD--- 366
           MRR L  +A +  R+   S++ +    S      ST+   +F+SS  P+ + K SP+   
Sbjct: 2   MRRFLARNAIAYTRNLLQSSSIQASKTSNPSLAISTRCKFRFYSSE-PDSSSKPSPESAL 60

Query: 365 ------------VEDVSTRDLKAMINKYYEEDDEEMVPSLLEAILKRKLTNTHEETDDEL 222
                       V DVS ++LK ++ KY++  DEE++PS++EAIL RK +  HEETDDEL
Sbjct: 61  LAQLKKKDDSVQVTDVSNKELKDLMEKYFK-GDEEVLPSIMEAILSRKFSGKHEETDDEL 119

Query: 221 VDQLQRNPSDALK 183
           +++L+  P D +K
Sbjct: 120 MEELRMKPLDDVK 132


>gb|AFK44604.1| unknown [Medicago truncatula]
          Length = 200

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 20/135 (14%)
 Frame = -3

Query: 536 MRRVLLNHASSCAR---HCRSSNTFKPISKSLVLPLNSTQSNIKFFSS-HNPNPNPKTSP 369
           M + LL +AS   R   H   S T  P++ S +       S  +FFSS  NP+P P T+ 
Sbjct: 1   MTQFLLRNASLYTRNLLHHHHSYTTAPLAASSL-------SRFRFFSSDENPSPPPSTNE 53

Query: 368 D----------------VEDVSTRDLKAMINKYYEEDDEEMVPSLLEAILKRKLTNTHEE 237
           +                V+DV  ++ KAMIN+Y  + DE ++P++++AI+ R+L+  HEE
Sbjct: 54  EKPSTLPSIKKDPAPLEVKDVGNKEFKAMINQYLHKHDETVLPAIMDAIMVRRLSGLHEE 113

Query: 236 TDDELVDQLQRNPSD 192
           TDDE++++LQ  P D
Sbjct: 114 TDDEIMNELQMAPID 128


>gb|ACJ85348.1| unknown [Medicago truncatula]
          Length = 255

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 48/135 (35%), Positives = 75/135 (55%), Gaps = 20/135 (14%)
 Frame = -3

Query: 536 MRRVLLNHASSCAR---HCRSSNTFKPISKSLVLPLNSTQSNIKFFSS-HNPNPNPKTSP 369
           M + LL +AS   R   H   S T  P++ S +       S  +FFSS  NP+P P T+ 
Sbjct: 1   MTQFLLRNASLYTRNLLHHHHSYTTAPLAASSL-------SRFRFFSSDENPSPPPSTNE 53

Query: 368 D----------------VEDVSTRDLKAMINKYYEEDDEEMVPSLLEAILKRKLTNTHEE 237
           +                V+DV  ++ KAMIN+Y  + DE ++P++++AI+ R+L+  HEE
Sbjct: 54  EKPSTLPSIKKDPAPLEVKDVGNKEFKAMINQYLHKHDETVLPAIMDAIMVRRLSGLHEE 113

Query: 236 TDDELVDQLQRNPSD 192
           TDDE++++LQ  P D
Sbjct: 114 TDDEIMNELQMAPID 128


Top