BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023280
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subun...    60   2e-18
emb|CAN75427.1| hypothetical protein VITISV_003301 [Vitis vinifera]    60   2e-18
ref|XP_002528507.1| spliceosome associated protein, putative [Ri...    57   8e-16
ref|XP_002306395.1| predicted protein [Populus trichocarpa] gi|2...    55   8e-16
ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subun...    56   1e-12

>ref|XP_002278479.1| PREDICTED: probable splicing factor 3A subunit 1-like [Vitis
            vinifera]
          Length = 814

 Score = 60.1 bits (144), Expect(2) = 2e-18
 Identities = 45/144 (31%), Positives = 54/144 (37%), Gaps = 4/144 (2%)
 Frame = +2

Query: 2    QYSVPNSSGXXXXXXXXXXXXXXXXSLGPLHPPMQMNSGQQPLMVNRPP-SLPP-VSMTL 175
            QYS P +SG                S+ P  PPM + SGQQPLM+NRPP  +PP +S+  
Sbjct: 582  QYSAPTNSGLLAPPPPRPPIVSMIPSIRPAPPPMSLTSGQQPLMLNRPPLPMPPSISVNA 641

Query: 176  XXXXXXXXXXXXXXXXXXXRSFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
                               RSF                                      
Sbjct: 642  PNIPVPPPPGSQFMPMPVPRSFVPLPVPPPAMHMIQPPPLPQGVPPPPPPEEAPPPLPEE 701

Query: 356  X--KRQRVDDSSFIPEDKFLAQHP 421
               KRQR+DDS  IPED+FLAQHP
Sbjct: 702  PEPKRQRLDDSLLIPEDQFLAQHP 725



 Score = 57.0 bits (136), Expect(2) = 2e-18
 Identities = 27/30 (90%), Positives = 30/30 (100%)
 Frame = +3

Query: 423 VDEGNLKGQLLEITIQSLSETIGSVKEKIA 512
           VDEGNLKGQLLEIT+QSLSET+GS+KEKIA
Sbjct: 737 VDEGNLKGQLLEITVQSLSETVGSLKEKIA 766


>emb|CAN75427.1| hypothetical protein VITISV_003301 [Vitis vinifera]
          Length = 792

 Score = 60.1 bits (144), Expect(2) = 2e-18
 Identities = 45/144 (31%), Positives = 54/144 (37%), Gaps = 4/144 (2%)
 Frame = +2

Query: 2   QYSVPNSSGXXXXXXXXXXXXXXXXSLGPLHPPMQMNSGQQPLMVNRPP-SLPP-VSMTL 175
           QYS P +SG                S+ P  PPM + SGQQPLM+NRPP  +PP +S+  
Sbjct: 560 QYSAPTNSGLLAPPPPRPPIVSMIPSIRPAPPPMSLTSGQQPLMLNRPPLPMPPSISVNA 619

Query: 176 XXXXXXXXXXXXXXXXXXXRSFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
                              RSF                                      
Sbjct: 620 PNIPVPPPPGSQFMPMPVPRSFVPLPVPPPAMHMIQPPPLPQGVPPPPPPEEAPPPLPEE 679

Query: 356 X--KRQRVDDSSFIPEDKFLAQHP 421
              KRQR+DDS  IPED+FLAQHP
Sbjct: 680 PEPKRQRLDDSLLIPEDQFLAQHP 703



 Score = 57.0 bits (136), Expect(2) = 2e-18
 Identities = 27/30 (90%), Positives = 30/30 (100%)
 Frame = +3

Query: 423 VDEGNLKGQLLEITIQSLSETIGSVKEKIA 512
           VDEGNLKGQLLEIT+QSLSET+GS+KEKIA
Sbjct: 715 VDEGNLKGQLLEITVQSLSETVGSLKEKIA 744


>ref|XP_002528507.1| spliceosome associated protein, putative [Ricinus communis]
           gi|223532067|gb|EEF33876.1| spliceosome associated
           protein, putative [Ricinus communis]
          Length = 816

 Score = 56.6 bits (135), Expect(2) = 8e-16
 Identities = 40/118 (33%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
 Frame = +2

Query: 77  SLGPLHPPMQMNSGQQPLMVNRPPSLPP-VSMTLXXXXXXXXXXXXXXXXXXXRSFAXXX 253
           S+ P  PPMQM SGQQ +MVNRPP +PP +S+                     RSF    
Sbjct: 610 SIRPPQPPMQMASGQQHIMVNRPPPMPPSISVNPQSMPVPPPPGSQFTPMQIPRSFVPLP 669

Query: 254 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRQRVDDSSFIPEDKFLAQHP 421
                                                KRQR+DDS  IPED+FLAQHP
Sbjct: 670 VPPSISMMPPPPPLPHGMPPPPPPEDNPPPLPDEPEPKRQRLDDSMLIPEDQFLAQHP 727



 Score = 51.6 bits (122), Expect(2) = 8e-16
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +3

Query: 423 VDEGNLKGQLLEITIQSLSETIGSVKEKIA 512
           VDEGNLKGQ+LEIT+QSLSE + S+KEKIA
Sbjct: 739 VDEGNLKGQVLEITVQSLSENVASLKEKIA 768


>ref|XP_002306395.1| predicted protein [Populus trichocarpa] gi|222855844|gb|EEE93391.1|
           predicted protein [Populus trichocarpa]
          Length = 776

 Score = 54.7 bits (130), Expect(2) = 8e-16
 Identities = 25/30 (83%), Positives = 30/30 (100%)
 Frame = +3

Query: 423 VDEGNLKGQLLEITIQSLSETIGSVKEKIA 512
           +DEGNLKGQ+LEIT+QSLSET+GS+KEKIA
Sbjct: 699 IDEGNLKGQVLEITMQSLSETVGSLKEKIA 728



 Score = 53.5 bits (127), Expect(2) = 8e-16
 Identities = 36/112 (32%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
 Frame = +2

Query: 95  PPMQMNSGQQPLMVNRPPSLPPVSMTLXXXXXXXXXXXXXXXXXXXRSFAXXXXXXXXXX 274
           PPMQM  GQQ +MVNRPP +PP+                       RSFA          
Sbjct: 576 PPMQMAPGQQHIMVNRPPPMPPLMSGNPSLPVPPPPGSEYNSMAVPRSFAPHPVSQPGLH 635

Query: 275 XXXXXXXXXXXXXXXXXXXXXXXXXXXX---KRQRVDDSSFIPEDKFLAQHP 421
                                          KRQR+DDS+ +PED+FLAQHP
Sbjct: 636 MMPPPPPLPQGMPPPPPPEDAPPPLPDEPEPKRQRLDDSALVPEDQFLAQHP 687


>ref|XP_003534698.1| PREDICTED: probable splicing factor 3A subunit 1-like [Glycine max]
          Length = 806

 Score = 55.8 bits (133), Expect(2) = 1e-12
 Identities = 26/30 (86%), Positives = 30/30 (100%)
 Frame = +3

Query: 423 VDEGNLKGQLLEITIQSLSETIGSVKEKIA 512
           VDEGNLKGQ+LEIT+QSLSET+GS+KEKIA
Sbjct: 729 VDEGNLKGQVLEITVQSLSETVGSLKEKIA 758



 Score = 42.0 bits (97), Expect(2) = 1e-12
 Identities = 31/112 (27%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
 Frame = +2

Query: 95  PPMQMNSGQQPLMVNRPPSL-PPVSMTLXXXXXXXXXXXXXXXXXXXRSFAXXXXXXXXX 271
           PPM MN+GQQ +M  +PP + P + M                     R F          
Sbjct: 606 PPMPMNTGQQSVMAGQPPPMHPSIPMNNQGIPIPPPPGSHFTHVPVPRPFVPLSVPQSVM 665

Query: 272 XXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRQRVDDSSFIPEDKFLAQHP 421
                                          KRQ++DDS+ IPED+FLAQHP
Sbjct: 666 PMMHPPPLPQGVPPPLPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHP 717