BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023203
         (629 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC24057.1| Contains similarity to reverse transcriptase-like...    86   7e-15
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    84   2e-14
gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thali...    81   2e-13
ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcript...    80   2e-13
dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis ...    80   4e-13

>gb|AAC24057.1| Contains similarity to reverse transcriptase-like protein
           gb|2244803 from A. thaliana chromosome 4 contig
           gb|Z97336 [Arabidopsis thaliana]
          Length = 404

 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 1/131 (0%)
 Frame = +3

Query: 51  PIKYLGLPPLSTRLDARDSLPLLEKITNKISNWNNKVLSAAGRLQLIQDVLASFLIYLAR 230
           P++YLGLP ++ RL A D LPLLEKI  +I +W  + LS AGRL LI  VL S   +   
Sbjct: 61  PVRYLGLPLVNKRLSAADYLPLLEKIRQRIGSWTARFLSFAGRLNLISSVLWSICNFWMA 120

Query: 231 TFIFLKTILENVNKLCSRFLWERPRLKKKMHRVRAQKTRCLR*QLKKILYGIMKLSYD-C 407
            F   +  +  V+K+CS FLW    +K    +V  Q+              I K  ++  
Sbjct: 121 AFRLPRGCIREVDKICSAFLWSGQEMKTTKAKVSWQE--------------ICKPKHEGG 166

Query: 408 SWVWRNVLKYK 440
           SW+W+ +LKY+
Sbjct: 167 SWMWKKLLKYR 177


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 42/93 (45%), Positives = 58/93 (62%)
 Frame = +3

Query: 51   PIKYLGLPPLSTRLDARDSLPLLEKITNKISNWNNKVLSAAGRLQLIQDVLASFLIYLAR 230
            P+KYLGLP L+ R+   D LPL+EKI  +I++W N+ LS AGRLQLI+ VL+S   +   
Sbjct: 915  PVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLS 974

Query: 231  TFIFLKTILENVNKLCSRFLWERPRLKKKMHRV 329
             F   K  L+ + K+ S FLW  P L  K  ++
Sbjct: 975  VFRLPKACLQEIEKMFSAFLWSGPDLNTKKAKI 1007


>gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thaliana]
          Length = 355

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 41/101 (40%), Positives = 59/101 (58%)
 Frame = +3

Query: 51  PIKYLGLPPLSTRLDARDSLPLLEKITNKISNWNNKVLSAAGRLQLIQDVLASFLIYLAR 230
           P++YLGLP ++  + A D LPL+EKI  +IS+W  + LS  GRLQLI+ VL S   + + 
Sbjct: 13  PVRYLGLPLMTKAMTAHDYLPLIEKIRKRISSWTGRFLSYCGRLQLIKSVLMSITNFWSS 72

Query: 231 TFIFLKTILENVNKLCSRFLWERPRLKKKMHRVRAQKTRCL 353
            F      ++ + +LCS FLW  P LK    ++   K  CL
Sbjct: 73  AFRLPGNCMKEIERLCSAFLWSGPDLKTHNAKIAWSKV-CL 112


>ref|NP_189068.2| RNA-directed DNA polymerase (reverse transcriptase)-related protein
           [Arabidopsis thaliana] gi|332643359|gb|AEE76880.1|
           RNA-directed DNA polymerase (reverse
           transcriptase)-related protein [Arabidopsis thaliana]
          Length = 746

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
 Frame = +3

Query: 51  PIKYLGLPPLSTRLDARDSLPLLEKITNKISNWNNKVLSAAGRLQLIQDVLASFLIYLAR 230
           P++YLGLP L+ ++   D  PL+EKI  +I  W  + LS AGRLQLI  V+ S   +   
Sbjct: 24  PVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMS 83

Query: 231 TFIFLKTILENVNKLCSRFLWERPRLKKKMHRVRAQKT-----------RCLR*QLKKIL 377
            F      ++ ++ +CS FLW  P L  K  +V                R L+   K   
Sbjct: 84  AFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSF 143

Query: 378 YGIMKLSYDCSWVWRNVLKYKK----FVEKIIKNSTN 476
           + I   +   SW+W+ +LK++     FV+  I N +N
Sbjct: 144 WSISGNTTLGSWMWKKILKHRALASGFVKHDIHNGSN 180


>dbj|BAB01344.1| reverse transcriptase-like protein [Arabidopsis thaliana]
          Length = 1115

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 39/97 (40%), Positives = 55/97 (56%)
 Frame = +3

Query: 39  LVNPPIKYLGLPPLSTRLDARDSLPLLEKITNKISNWNNKVLSAAGRLQLIQDVLASFLI 218
           L   P++YLGLP ++ RL   D  PL E+I N+I  W ++ LS AGRL LI  VL S + 
Sbjct: 681 LAQLPVRYLGLPLVTKRLTKEDLSPLFEQIRNRIGTWTSRYLSFAGRLNLISSVLWSTMN 740

Query: 219 YLARTFIFLKTILENVNKLCSRFLWERPRLKKKMHRV 329
           +    F      L+ +N +CS FLW  P L ++  +V
Sbjct: 741 FWMSAFRLPSACLKEINSICSAFLWSGPELNRRKAKV 777