BLASTX nr result
ID: Cimicifuga21_contig00023187
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00023187
(867 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-... 194 9e-50
emb|CBI24961.3| unnamed protein product [Vitis vinifera] 194 9e-50
dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila] 169 1e-39
dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis ... 168 1e-39
ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD,... 164 6e-39
>ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 194 bits (493), Expect(2) = 9e-50
Identities = 101/163 (61%), Positives = 122/163 (74%), Gaps = 5/163 (3%)
Frame = -2
Query: 536 KWSTHDEMEMQFSFRKSSSSCLTPKEEAEFTLYLKXXXXXXXXXXXGCEV-----TTSQW 372
KW + E+ SF + S+ LTP+EEAEF L LK E T++QW
Sbjct: 111 KWDGEEVHEV--SFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQW 168
Query: 371 AEPMGMKRSSLERIMCKARESRERIIVSYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLR 192
AE +G+KRSSL++++C RESRERI SYRRLVVSIA YQGKGLSLQDLIQEGSIGLLR
Sbjct: 169 AEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLR 228
Query: 191 GAEKFDPNKGFKLSTYVYWWIKQAIIRAIANKSRIVRLPHVVC 63
GAE+FDP++G+KLSTYVYWWI+QAI+RAIANKSRI+RLP +C
Sbjct: 229 GAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSIC 271
Score = 29.6 bits (65), Expect(2) = 9e-50
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 69 RV*GNMCKMVPKIAEANNALTRR 1
R+ G++C+MV KIAEA L+RR
Sbjct: 265 RLPGSICEMVAKIAEARTVLSRR 287
>emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 194 bits (493), Expect(2) = 9e-50
Identities = 101/163 (61%), Positives = 122/163 (74%), Gaps = 5/163 (3%)
Frame = -2
Query: 536 KWSTHDEMEMQFSFRKSSSSCLTPKEEAEFTLYLKXXXXXXXXXXXGCEV-----TTSQW 372
KW + E+ SF + S+ LTP+EEAEF L LK E T++QW
Sbjct: 4 KWDGEEVHEV--SFGAARSAVLTPREEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQW 61
Query: 371 AEPMGMKRSSLERIMCKARESRERIIVSYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLR 192
AE +G+KRSSL++++C RESRERI SYRRLVVSIA YQGKGLSLQDLIQEGSIGLLR
Sbjct: 62 AEAVGIKRSSLDKMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLR 121
Query: 191 GAEKFDPNKGFKLSTYVYWWIKQAIIRAIANKSRIVRLPHVVC 63
GAE+FDP++G+KLSTYVYWWI+QAI+RAIANKSRI+RLP +C
Sbjct: 122 GAERFDPDRGYKLSTYVYWWIRQAIVRAIANKSRIIRLPGSIC 164
Score = 29.6 bits (65), Expect(2) = 9e-50
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 69 RV*GNMCKMVPKIAEANNALTRR 1
R+ G++C+MV KIAEA L+RR
Sbjct: 158 RLPGSICEMVAKIAEARTVLSRR 180
>dbj|BAJ34231.1| unnamed protein product [Thellungiella halophila]
Length = 269
Score = 169 bits (427), Expect = 1e-39
Identities = 88/148 (59%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Frame = -2
Query: 488 SSSSCLTPKEEAEFTLYLKXXXXXXXXXXXG--CEVTTSQWAEPMGMKRSSLERIMCKAR 315
S S L+ EE + LYLK E+ + + G K+ S I+C+ R
Sbjct: 120 SRSGFLSRLEEVQLCLYLKEGAKLENVGTSVEENEIVSVLLSSGKGKKKRSANEILCRRR 179
Query: 314 ESRERIIVSYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLRGAEKFDPNKGFKLSTYVYW 135
E+RE+I YRRLVVSIATGYQGKGL+LQDLIQEGSIGLLRGAE+FDP +G+KLSTYVYW
Sbjct: 180 EAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPERGYKLSTYVYW 239
Query: 134 WIKQAIIRAIANKSRIVRLPHVVCRETC 51
WIKQAI+RAIA+KSR+V+LP VVCRE C
Sbjct: 240 WIKQAILRAIAHKSRLVKLPLVVCREAC 267
>dbj|BAA78111.1| RNA polymerase sigma subunit SigD* [Arabidopsis thaliana]
gi|16649075|gb|AAL24389.1| sigma-like factor
[Arabidopsis thaliana] gi|21387209|gb|AAM48008.1|
sigma-like factor [Arabidopsis thaliana]
Length = 267
Score = 168 bits (426), Expect = 1e-39
Identities = 88/148 (59%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Frame = -2
Query: 488 SSSSCLTPKEEAEFTLYLKXXXXXXXXXXXG--CEVTTSQWAEPMGMKRSSLERIMCKAR 315
S S L+ EE + LYLK E+ + A G K+ S I+C+ +
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEENEMVSVLLASGRGKKKRSANEILCRRK 177
Query: 314 ESRERIIVSYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLRGAEKFDPNKGFKLSTYVYW 135
E+RE+I YRRLVVSIATGYQGKGL+LQDLIQEGSIGLLRGAE+FDP++G+KLSTYVYW
Sbjct: 178 EAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYW 237
Query: 134 WIKQAIIRAIANKSRIVRLPHVVCRETC 51
WIKQAI+RAIA+KSR+V+LP VVCRE C
Sbjct: 238 WIKQAILRAIAHKSRLVKLPLVVCREAC 265
>ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 164 bits (416), Expect(2) = 6e-39
Identities = 107/277 (38%), Positives = 147/277 (53%), Gaps = 22/277 (7%)
Frame = -2
Query: 839 TMATICASTHNSPNLPTISLYQVPT-KPSIRXXXXXXXXXXXQKIGPSLVSDDTSTIXXX 663
T +++C+ SP LP+ISL +P+ K + K+GP+++S+DT T+
Sbjct: 3 TTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLPPP 62
Query: 662 XXXXXXXXXXXXXARDVLIL---LHEETESCGIER------GSGLXXXXXRKWSTHDEME 510
VL+ E+ S +E+ G G ++ E+
Sbjct: 63 PEAAVLAVEAAG--EHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120
Query: 509 MQ-------FSFRKSSSSCLTPKEEAEFTLYLKXXXXXXXXXXXGCEV-----TTSQWAE 366
++ S L+PKEEAE L LK E T Q A
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180
Query: 365 PMGMKRSSLERIMCKARESRERIIVSYRRLVVSIATGYQGKGLSLQDLIQEGSIGLLRGA 186
MG K ++RI+C+ARESR+R+I Y +LV+SIA YQGKGLSLQDL QEG+IGLL+GA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240
Query: 185 EKFDPNKGFKLSTYVYWWIKQAIIRAIANKSRIVRLP 75
E+F+PN+G KLSTY YWWI+QAIIRA+ KSR+VRLP
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLP 277
Score = 23.1 bits (48), Expect(2) = 6e-39
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 69 RV*GNMCKMVPKIAEANNAL 10
R+ G+M +MV +IAE NN L
Sbjct: 275 RLPGHMGQMVARIAEENNHL 294