BLASTX nr result

ID: Cimicifuga21_contig00023117 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00023117
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002315117.1| predicted protein [Populus trichocarpa] gi|2...   168   4e-40
ref|XP_002268068.2| PREDICTED: probable E3 ubiquitin-protein lig...   167   8e-40
emb|CBI38350.3| unnamed protein product [Vitis vinifera]              167   8e-40
emb|CAN83309.1| hypothetical protein VITISV_023021 [Vitis vinifera]   167   8e-40
ref|XP_002312201.1| predicted protein [Populus trichocarpa] gi|2...   166   1e-39

>ref|XP_002315117.1| predicted protein [Populus trichocarpa] gi|222864157|gb|EEF01288.1|
           predicted protein [Populus trichocarpa]
          Length = 591

 Score =  168 bits (426), Expect = 4e-40
 Identities = 85/153 (55%), Positives = 103/153 (67%), Gaps = 36/153 (23%)
 Frame = +3

Query: 3   AYGYYLPEDQHAKRQLFEFLQGQAESGLERLHECAEKDLQVHLKAEGPSKDFNEFRTKLA 182
           AYGYYLPE +HAKR  FE++QG+AESGLERLH+CAEK+LQ++L AEGPSKDFNEFRTKLA
Sbjct: 438 AYGYYLPEHEHAKRMFFEYVQGEAESGLERLHQCAEKELQIYLNAEGPSKDFNEFRTKLA 497

Query: 183 GLTSVTRNYFENLVQALENGLADVNTLGK------------------------------- 269
           GLTSVTRNYFENLV+ALENGL+DV++ G                                
Sbjct: 498 GLTSVTRNYFENLVRALENGLSDVDSHGTCSRTASSKSLGGGSSRARAGRGKGSTSRSSG 557

Query: 270 -----EDLGTWSCKDCGYSNGKYSTICLMCNRR 353
                +D G WSC+ C ++N K +TIC MC +R
Sbjct: 558 PSRNIDDPGHWSCEHCTFANIKPATICAMCQQR 590


>ref|XP_002268068.2| PREDICTED: probable E3 ubiquitin-protein ligase ARI8-like [Vitis
           vinifera]
          Length = 652

 Score =  167 bits (423), Expect = 8e-40
 Identities = 84/153 (54%), Positives = 103/153 (67%), Gaps = 36/153 (23%)
 Frame = +3

Query: 3   AYGYYLPEDQHAKRQLFEFLQGQAESGLERLHECAEKDLQVHLKAEGPSKDFNEFRTKLA 182
           AYGYYLPE +HAKRQ FE+LQG+AESGLERLH+CAEK+LQ +L A+GPSKDFNEFRTKLA
Sbjct: 499 AYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQTYLDADGPSKDFNEFRTKLA 558

Query: 183 GLTSVTRNYFENLVQALENGLADVNTLGK------------------------------- 269
           GLTSVTRNYFENLV+ALENGL+DV++ G                                
Sbjct: 559 GLTSVTRNYFENLVRALENGLSDVDSRGACSRTASSKSLGGGSSKARGGRGKGTSSRSSS 618

Query: 270 -----EDLGTWSCKDCGYSNGKYSTICLMCNRR 353
                +D G WSC+ C ++N + +TIC +C +R
Sbjct: 619 SSRNLDDSGHWSCEHCTFANVRSATICQICQQR 651


>emb|CBI38350.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  167 bits (423), Expect = 8e-40
 Identities = 84/153 (54%), Positives = 103/153 (67%), Gaps = 36/153 (23%)
 Frame = +3

Query: 3   AYGYYLPEDQHAKRQLFEFLQGQAESGLERLHECAEKDLQVHLKAEGPSKDFNEFRTKLA 182
           AYGYYLPE +HAKRQ FE+LQG+AESGLERLH+CAEK+LQ +L A+GPSKDFNEFRTKLA
Sbjct: 428 AYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQTYLDADGPSKDFNEFRTKLA 487

Query: 183 GLTSVTRNYFENLVQALENGLADVNTLGK------------------------------- 269
           GLTSVTRNYFENLV+ALENGL+DV++ G                                
Sbjct: 488 GLTSVTRNYFENLVRALENGLSDVDSRGACSRTASSKSLGGGSSKARGGRGKGTSSRSSS 547

Query: 270 -----EDLGTWSCKDCGYSNGKYSTICLMCNRR 353
                +D G WSC+ C ++N + +TIC +C +R
Sbjct: 548 SSRNLDDSGHWSCEHCTFANVRSATICQICQQR 580


>emb|CAN83309.1| hypothetical protein VITISV_023021 [Vitis vinifera]
          Length = 588

 Score =  167 bits (423), Expect = 8e-40
 Identities = 84/153 (54%), Positives = 103/153 (67%), Gaps = 36/153 (23%)
 Frame = +3

Query: 3   AYGYYLPEDQHAKRQLFEFLQGQAESGLERLHECAEKDLQVHLKAEGPSKDFNEFRTKLA 182
           AYGYYLPE +HAKRQ FE+LQG+AESGLERLH+CAEK+LQ +L A+GPSKDFNEFRTKLA
Sbjct: 435 AYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQTYLDADGPSKDFNEFRTKLA 494

Query: 183 GLTSVTRNYFENLVQALENGLADVNTLGK------------------------------- 269
           GLTSVTRNYFENLV+ALENGL+DV++ G                                
Sbjct: 495 GLTSVTRNYFENLVRALENGLSDVDSRGACSRTASSKSLGGGSSKARGGRGKGTSSRSSS 554

Query: 270 -----EDLGTWSCKDCGYSNGKYSTICLMCNRR 353
                +D G WSC+ C ++N + +TIC +C +R
Sbjct: 555 SSRNLDDSGHWSCEHCTFANVRSATICQICQQR 587


>ref|XP_002312201.1| predicted protein [Populus trichocarpa] gi|222852021|gb|EEE89568.1|
           predicted protein [Populus trichocarpa]
          Length = 591

 Score =  166 bits (421), Expect = 1e-39
 Identities = 85/153 (55%), Positives = 103/153 (67%), Gaps = 36/153 (23%)
 Frame = +3

Query: 3   AYGYYLPEDQHAKRQLFEFLQGQAESGLERLHECAEKDLQVHLKAEGPSKDFNEFRTKLA 182
           AYGYYLPE +HAKR  FE+LQG+AESGLERLH+CAEK+LQ++L AEGPSKDFNEFRTKLA
Sbjct: 438 AYGYYLPEHEHAKRLFFEYLQGEAESGLERLHQCAEKELQIYLNAEGPSKDFNEFRTKLA 497

Query: 183 GLTSVTRNYFENLVQALENGLADVNTLGK------------------------------- 269
           GLTSVTRNYFENLV+ALENGL+DV++ G                                
Sbjct: 498 GLTSVTRNYFENLVRALENGLSDVDSHGACSRMASSKSLGGGSSRARAGRGKGSTSRSSG 557

Query: 270 -----EDLGTWSCKDCGYSNGKYSTICLMCNRR 353
                ++ G WSC+ C ++N K +TIC MC +R
Sbjct: 558 PSRNIDEPGHWSCEYCTFANIKPATICAMCQQR 590


Top