BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022828
         (1015 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   283   5e-74
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   271   2e-70
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi...   256   6e-66
ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana] g...   256   8e-66
dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]    255   1e-65

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
            gi|297738371|emb|CBI27572.3| unnamed protein product
            [Vitis vinifera]
          Length = 623

 Score =  283 bits (724), Expect = 5e-74
 Identities = 138/200 (69%), Positives = 166/200 (83%), Gaps = 1/200 (0%)
 Frame = +1

Query: 1    ILTRLHDYAEYMGPAARVILVPSIRDASHDFVFPQPAFDIHTADLKNQITCLTNPGIFNA 180
            IL RL DY EYMG AARVILVPSIRDA+HDFVFPQPAF IH  DLK+QIT LTNPG+F+A
Sbjct: 424  ILRRLQDYVEYMGSAARVILVPSIRDANHDFVFPQPAFSIHPPDLKHQITSLTNPGMFDA 483

Query: 181  NKVKVGCCSVDILRQLSGEEISRIPAS-ASRDRLGRLATHLLRQRSFYPLYPPSEDVPLD 357
            N+VKVGCC+VD+++QLSGE ISR P   +SRDR+  +A H+L QRSFYPLYP +E +PLD
Sbjct: 484  NEVKVGCCTVDVIKQLSGEMISRNPTDGSSRDRMTTIANHILSQRSFYPLYPLAEGIPLD 543

Query: 358  LSLATEALQIPTIPNILVLPSDLAPFVKVLSIGENASGEEQIRCIAVNPGRLAKGVGGGT 537
             SLA EAL++ TIP++L+LPSDLA FVKVLS+G    GEE ++CI VNPGRLAKG GGG 
Sbjct: 544  FSLAPEALEVSTIPDVLILPSDLASFVKVLSLGGRNEGEELVKCICVNPGRLAKGEGGGH 603

Query: 538  FVELNYQKDHEKTNASIVRM 597
            FVELNYQ   +KT+AS++R+
Sbjct: 604  FVELNYQGSPDKTSASVIRI 623


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
            gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
            putative [Ricinus communis]
          Length = 621

 Score =  271 bits (693), Expect = 2e-70
 Identities = 127/198 (64%), Positives = 161/198 (81%), Gaps = 1/198 (0%)
 Frame = +1

Query: 1    ILTRLHDYAEYMGPAARVILVPSIRDASHDFVFPQPAFDIHTADLKNQITCLTNPGIFNA 180
            IL RL DY EYMG  A+V++VPS RDA+HDFVFPQPAFDIH ++L++QI  LTNPGIF A
Sbjct: 422  ILRRLQDYVEYMGSDAQVLIVPSTRDANHDFVFPQPAFDIHRSNLQHQIRSLTNPGIFEA 481

Query: 181  NKVKVGCCSVDILRQLSGEEISRIPASAS-RDRLGRLATHLLRQRSFYPLYPPSEDVPLD 357
            N+V+VGCC+VDI++QL  EE+SR P   +  +R+ RLA H+L QRSFYPLYPP+EDVPLD
Sbjct: 482  NQVRVGCCTVDIIKQLGSEEMSRNPTDGTPSNRMSRLANHILSQRSFYPLYPPAEDVPLD 541

Query: 358  LSLATEALQIPTIPNILVLPSDLAPFVKVLSIGENASGEEQIRCIAVNPGRLAKGVGGGT 537
             SLA EAL IP++P+IL++PSD+  F+KVLS+G    GEEQ +C+ +NPGRLAKG GGGT
Sbjct: 542  FSLAPEALHIPSVPHILIVPSDMKYFIKVLSLGGRIEGEEQTKCVCINPGRLAKGEGGGT 601

Query: 538  FVELNYQKDHEKTNASIV 591
            FVELNY+   +K NAS++
Sbjct: 602  FVELNYRGSPDKMNASVI 619


>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
            lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
            subunit B family [Arabidopsis lyrata subsp. lyrata]
          Length = 619

 Score =  256 bits (654), Expect = 6e-66
 Identities = 123/197 (62%), Positives = 154/197 (78%)
 Frame = +1

Query: 1    ILTRLHDYAEYMGPAARVILVPSIRDASHDFVFPQPAFDIHTADLKNQITCLTNPGIFNA 180
            +L +L DY E+MG   RV+LVPSIRDA+HDF+FPQP FDIH  DL++Q+T L+NPG F A
Sbjct: 424  VLRKLRDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGTFEA 483

Query: 181  NKVKVGCCSVDILRQLSGEEISRIPASASRDRLGRLATHLLRQRSFYPLYPPSEDVPLDL 360
            N+VKVGCC+VD+L+QLSGEE+S+ P+    DR+ RLA+HLLRQRSFYPLYPP E +P D 
Sbjct: 484  NQVKVGCCTVDVLKQLSGEEMSKNPSGVPTDRMSRLASHLLRQRSFYPLYPPPESLPYDS 543

Query: 361  SLATEALQIPTIPNILVLPSDLAPFVKVLSIGENASGEEQIRCIAVNPGRLAKGVGGGTF 540
            SLA +ALQI +IP+IL+LPSD+  FVK+LS+GE    E   +C+ VNPGRLAKG G GTF
Sbjct: 544  SLAPKALQILSIPDILLLPSDMRYFVKILSLGEE---ENAAKCVCVNPGRLAKGEGAGTF 600

Query: 541  VELNYQKDHEKTNASIV 591
            VEL Y+   E   ASI+
Sbjct: 601  VELTYKGGPESMRASII 617


>ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana]
            gi|332196552|gb|AEE34673.1| DNA polymerase alpha 2
            [Arabidopsis thaliana]
          Length = 620

 Score =  256 bits (653), Expect = 8e-66
 Identities = 122/197 (61%), Positives = 155/197 (78%)
 Frame = +1

Query: 1    ILTRLHDYAEYMGPAARVILVPSIRDASHDFVFPQPAFDIHTADLKNQITCLTNPGIFNA 180
            +L +L DY E+MG   RV+LVPSIRDA+HDF+FPQP FDIH  DL++Q+T L+NPG F A
Sbjct: 425  VLRKLQDYVEFMGSEVRVVLVPSIRDANHDFIFPQPPFDIHIPDLEHQMTSLSNPGTFEA 484

Query: 181  NKVKVGCCSVDILRQLSGEEISRIPASASRDRLGRLATHLLRQRSFYPLYPPSEDVPLDL 360
            N+VKV CC+VD+L+QLSGEE+S+ P+    DR+ RLA+HLLRQRSFYPLYPP E +P D 
Sbjct: 485  NQVKVSCCTVDVLKQLSGEEMSKNPSGVPTDRMSRLASHLLRQRSFYPLYPPPESLPYDS 544

Query: 361  SLATEALQIPTIPNILVLPSDLAPFVKVLSIGENASGEEQIRCIAVNPGRLAKGVGGGTF 540
            SLA +ALQI +IP+IL+LPSD+  FVK+LS+GE    E+  +C+ VNPGRLAKG G GTF
Sbjct: 545  SLAPKALQISSIPDILLLPSDMRYFVKILSLGEE---EDAAKCVCVNPGRLAKGEGAGTF 601

Query: 541  VELNYQKDHEKTNASIV 591
            VEL Y+   E  +ASI+
Sbjct: 602  VELTYKGGPESMHASII 618


>dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score =  255 bits (652), Expect = 1e-65
 Identities = 125/201 (62%), Positives = 162/201 (80%), Gaps = 2/201 (0%)
 Frame = +1

Query: 1    ILTRLHDYAEYMGPAARVILVPSIRDASHDFVFPQPAFDIHTA-DLKNQITCLTNPGIFN 177
            IL +L D+ +Y+G   RVILVPS+RDA HD VFPQPAFD+H   D+  QITCL+NP +F+
Sbjct: 427  ILRKLQDFTQYLGYNVRVILVPSVRDAHHDTVFPQPAFDLHLPEDITQQITCLSNPSLFS 486

Query: 178  ANKVKVGCCSVDILRQLSGEEISRIPASA-SRDRLGRLATHLLRQRSFYPLYPPSEDVPL 354
            +N+++ GCC+VDIL+QLSG+EISR P    + DR+GRLATH+++Q+S+YPLYPP+  VP+
Sbjct: 487  SNEIQFGCCTVDILKQLSGDEISRKPPGGKAADRIGRLATHIVKQQSYYPLYPPAAGVPM 546

Query: 355  DLSLATEALQIPTIPNILVLPSDLAPFVKVLSIGENASGEEQIRCIAVNPGRLAKGVGGG 534
            D SLA EAL+IP+ P++L+LPSDLAP VKVLS+ E+   EEQ R I VNPGRLAKG+GGG
Sbjct: 547  DFSLAKEALEIPSAPDVLLLPSDLAPSVKVLSVNEDT--EEQKRFICVNPGRLAKGIGGG 604

Query: 535  TFVELNYQKDHEKTNASIVRM 597
            TFVEL Y +D EKT A I+R+
Sbjct: 605  TFVELYYNEDTEKTKAFIMRI 625