BLASTX nr result

ID: Cimicifuga21_contig00022437 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022437
         (565 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003507802.1| PREDICTED: elongation factor 1-alpha 1-like ...    54   1e-10
gb|EHB06043.1| Elongation factor 1-alpha 1 [Heterocephalus glaber]     52   3e-10
gb|AAV91356.1| elongation factor-1 [Lonomia obliqua]                   52   3e-10
ref|XP_003820651.1| PREDICTED: LOW QUALITY PROTEIN: elongation f...    51   3e-10
gb|ACO50114.1| elongation factor 1 alpha [Malawimonas californiana]    50   4e-10

>ref|XP_003507802.1| PREDICTED: elongation factor 1-alpha 1-like [Cricetulus griseus]
           gi|344244107|gb|EGW00211.1| Elongation factor 1-alpha 1
           [Cricetulus griseus]
          Length = 458

 Score = 53.5 bits (127), Expect(2) = 1e-10
 Identities = 27/43 (62%), Positives = 30/43 (69%)
 Frame = -2

Query: 564 WVLDKLMAKHECGITIDSAL*KFETSSASSISMYYYNVIDAPG 436
           WVLDKL A+ ECGITID +L KFETS       YY  +IDAPG
Sbjct: 58  WVLDKLKAERECGITIDISLWKFETSK------YYVTIIDAPG 94



 Score = 37.7 bits (86), Expect(2) = 1e-10
 Identities = 24/44 (54%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = -1

Query: 436 HLDFFKNMITGTSQADSAVL--NASTQQFVVL-----KTPEHAL 326
           H DF KNMITGTSQAD AVL   A   +F  +     +T EHAL
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGVGEFEAVISKNGQTCEHAL 138


>gb|EHB06043.1| Elongation factor 1-alpha 1 [Heterocephalus glaber]
          Length = 466

 Score = 52.0 bits (123), Expect(2) = 3e-10
 Identities = 26/43 (60%), Positives = 30/43 (69%)
 Frame = -2

Query: 564 WVLDKLMAKHECGITIDSAL*KFETSSASSISMYYYNVIDAPG 436
           W+LDKL A++ECGITID  L KFETS       YY  +IDAPG
Sbjct: 58  WLLDKLKAEYECGITIDIFLWKFETSK------YYMTIIDAPG 94



 Score = 37.7 bits (86), Expect(2) = 3e-10
 Identities = 24/44 (54%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = -1

Query: 436 HLDFFKNMITGTSQADSAVL--NASTQQF-----VVLKTPEHAL 326
           H DF KNMITGTSQAD AVL   A+  +F        +T EHAL
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAAVDEFKAGISKTGQTSEHAL 138


>gb|AAV91356.1| elongation factor-1 [Lonomia obliqua]
          Length = 428

 Score = 51.6 bits (122), Expect(2) = 3e-10
 Identities = 27/43 (62%), Positives = 29/43 (67%)
 Frame = -2

Query: 564 WVLDKLMAKHECGITIDSAL*KFETSSASSISMYYYNVIDAPG 436
           WVLDKL A+HE GITID AL KFET        YY  +IDAPG
Sbjct: 58  WVLDKLKAEHERGITIDIALWKFETGK------YYVTIIDAPG 94



 Score = 38.1 bits (87), Expect(2) = 3e-10
 Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
 Frame = -1

Query: 436 HLDFFKNMITGTSQADSAVL--NASTQQFVV-----LKTPEHAL 326
           H DF KNMITGTSQAD AVL   A T +F        +T EHAL
Sbjct: 95  HRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 138


>ref|XP_003820651.1| PREDICTED: LOW QUALITY PROTEIN: elongation factor 1-alpha, oocyte
           form-like [Pan paniscus]
          Length = 398

 Score = 50.8 bits (120), Expect(2) = 3e-10
 Identities = 27/43 (62%), Positives = 30/43 (69%)
 Frame = -2

Query: 564 WVLDKLMAKHECGITIDSAL*KFETSSASSISMYYYNVIDAPG 436
           WVLDKL A+HE GITID +L KFETS       YY  +IDAPG
Sbjct: 58  WVLDKLNAEHERGITIDISLWKFETSK------YYVAIIDAPG 94



 Score = 38.9 bits (89), Expect(2) = 3e-10
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = -1

Query: 436 HLDFFKNMITGTSQADSAVL 377
           H DF KNMITGTSQADSAVL
Sbjct: 95  HRDFIKNMITGTSQADSAVL 114


>gb|ACO50114.1| elongation factor 1 alpha [Malawimonas californiana]
          Length = 446

 Score = 49.7 bits (117), Expect(2) = 4e-10
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = -2

Query: 564 WVLDKLMAKHECGITIDSAL*KFETSSASSISMYYYNVIDAPG 436
           WVLDKL A+ E GITID AL KFET        YY+ +IDAPG
Sbjct: 58  WVLDKLKAERERGITIDIALWKFETPK------YYFTIIDAPG 94



 Score = 39.7 bits (91), Expect(2) = 4e-10
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 7/48 (14%)
 Frame = -1

Query: 436 HLDFFKNMITGTSQADSAVL--NASTQQFVV-----LKTPEHALSLIS 314
           H DF KNMITGTSQAD+AVL   A T +F        +T EHAL  I+
Sbjct: 95  HRDFIKNMITGTSQADAAVLVVAAGTGEFEAGISKDGQTREHALLAIT 142


Top