BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022352
         (1559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I an...   592   e-167
ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, ...   548   e-153
ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I an...   527   e-147
ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|2...   525   e-146
ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycin...   514   e-143

>ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
            [Vitis vinifera] gi|296089944|emb|CBI39763.3| unnamed
            protein product [Vitis vinifera]
          Length = 372

 Score =  592 bits (1527), Expect = e-167
 Identities = 292/380 (76%), Positives = 328/380 (86%)
 Frame = -3

Query: 1314 RISALDMPDVPMGQLPPHLQQQRTRVLCASDAPTHTESIQYSGAYAAVGVDNSLLMNHFV 1135
            R  ALDMPDVP GQLPPH++ QRTRVLC  DAPTHTE++QYSGAY+++GVDNSL M+ F 
Sbjct: 3    RSPALDMPDVPKGQLPPHIELQRTRVLCNFDAPTHTENVQYSGAYSSMGVDNSLRMDQFC 62

Query: 1134 ENFRVEVIRIGKASKDDLEDKKDSMEFDMIGIDASLANAFRRILISEVPTMAIEKVLIAN 955
             NFRVEVIR+ +          D MEFDMIGID S+ANAFRRILI+E+PTMAIEKVLIAN
Sbjct: 63   NNFRVEVIRLSE----------DDMEFDMIGIDPSIANAFRRILIAELPTMAIEKVLIAN 112

Query: 954  NTSLVQDEVLAHRLGLIPIEVDPRLFEYMSENDTPNEKNTIVFKLHVRCTKGSPRLTVKS 775
            NTS+VQDEVLAHRLGLIPI  DPRLF+ +SENDTPNEKNTIVF LHVRC +G PRLTVKS
Sbjct: 113  NTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPNEKNTIVFNLHVRCERGGPRLTVKS 172

Query: 774  DELKWLPNGSGFELETGHSQSDKKSGSKTYTSFSCSQDSLPEFANDPISPKHDDIIISKL 595
            +ELKWLP+GS F L T ++ S   S  KTYTSFSCSQDSLPEF++  I PKH DIII+KL
Sbjct: 173  NELKWLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDKSIGPKHPDIIIAKL 232

Query: 594  GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVELLQEVEGKLAKDLVEKCPVNVF 415
            GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV LLQE+E + A++LV+KCPVNVF
Sbjct: 233  GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDEKAEELVKKCPVNVF 292

Query: 414  DIEDIAEGKKRAFVARPRACTLCRECIRGEDWENRVALRRVKDHFIFTIESAGALPPEVL 235
            DIEDIA+GKK+A VARPRACTLCRECIRG+DW+  VA+RRVK+HFIFTIES GALPPEVL
Sbjct: 293  DIEDIAKGKKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFIFTIESTGALPPEVL 352

Query: 234  FTEAVKILEDKCHRVITELS 175
            F EAVK+LEDKC RVITELS
Sbjct: 353  FNEAVKVLEDKCERVITELS 372


>ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
            communis] gi|223538024|gb|EEF39637.1| DNA-directed RNA
            polymerase I/III subunits, putative [Ricinus communis]
          Length = 374

 Score =  548 bits (1412), Expect = e-153
 Identities = 274/380 (72%), Positives = 316/380 (83%)
 Frame = -3

Query: 1314 RISALDMPDVPMGQLPPHLQQQRTRVLCASDAPTHTESIQYSGAYAAVGVDNSLLMNHFV 1135
            + S  D+PDVPMGQLPPHLQ QRTRV+C SDAP HT++I YSGAYA++GVDNSL ++ F 
Sbjct: 13   KFSIWDLPDVPMGQLPPHLQLQRTRVVCKSDAPIHTDNIVYSGAYASIGVDNSLQLDCFR 72

Query: 1134 ENFRVEVIRIGKASKDDLEDKKDSMEFDMIGIDASLANAFRRILISEVPTMAIEKVLIAN 955
            +NF+VEVI++           KD MEFDMIGIDA++ANAFRRILISE+PTMAIEKVLIAN
Sbjct: 73   DNFKVEVIQL----------TKDDMEFDMIGIDAAIANAFRRILISELPTMAIEKVLIAN 122

Query: 954  NTSLVQDEVLAHRLGLIPIEVDPRLFEYMSENDTPNEKNTIVFKLHVRCTKGSPRLTVKS 775
            NTSL+QDEVLAHRLGLIPI  DPRLFEY+S NDTPNEKNTIVFKLH  C +G PR TV S
Sbjct: 123  NTSLIQDEVLAHRLGLIPINADPRLFEYLSANDTPNEKNTIVFKLHASCKRGEPRRTVYS 182

Query: 774  DELKWLPNGSGFELETGHSQSDKKSGSKTYTSFSCSQDSLPEFANDPISPKHDDIIISKL 595
            +ELKWLP GS    E+   ++D K    TYTSF+  QD +P+    P+SP  D II++KL
Sbjct: 183  EELKWLPGGSQLLKES--EKADSKPS--TYTSFTDKQDFIPK----PVSPSEDKIIVAKL 234

Query: 594  GPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVELLQEVEGKLAKDLVEKCPVNVF 415
            GPGQEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV LL+++E ++A++L +KCPVNVF
Sbjct: 235  GPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLEDIEDEIAEELTKKCPVNVF 294

Query: 414  DIEDIAEGKKRAFVARPRACTLCRECIRGEDWENRVALRRVKDHFIFTIESAGALPPEVL 235
            DIEDI  GKKRA VARPRACTLCRECIRG +W+ RV+LRRVKDHFIFTIES GALPPEVL
Sbjct: 295  DIEDIGNGKKRATVARPRACTLCRECIRGGEWDKRVSLRRVKDHFIFTIESTGALPPEVL 354

Query: 234  FTEAVKILEDKCHRVITELS 175
            FTEAVK+LEDKC RVITELS
Sbjct: 355  FTEAVKVLEDKCERVITELS 374


>ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1-like
            [Cucumis sativus] gi|449522768|ref|XP_004168398.1|
            PREDICTED: DNA-directed RNA polymerases I and III subunit
            RPAC1-like [Cucumis sativus]
          Length = 391

 Score =  527 bits (1358), Expect = e-147
 Identities = 269/377 (71%), Positives = 314/377 (83%), Gaps = 1/377 (0%)
 Frame = -3

Query: 1302 LDMPDVPMGQLPPHLQQQRTRVLCASDAPTHTESIQYSGAYAAVGVDNSLLMNHFVENFR 1123
            +++PDVPM +LPPH++ QRTRV C +DAP HT++IQYSGA+A++G DNSL +++F  NF+
Sbjct: 30   MNLPDVPM-KLPPHVELQRTRVECKADAPIHTDTIQYSGAFASMGFDNSLRLDNFRNNFK 88

Query: 1122 VEVIRIGKASKDDLEDKKDSMEFDMIGIDASLANAFRRILISEVPTMAIEKVLIANNTSL 943
            +EVI +          K+D +EFDMIGID +LANAFRRILISEVPTMAIEKVL ANNTS+
Sbjct: 89   IEVIDL----------KEDDIEFDMIGIDPALANAFRRILISEVPTMAIEKVLFANNTSI 138

Query: 942  VQDEVLAHRLGLIPIEVDPRLFEYMSENDTPNEKNTIVFKLHVRCTKGSPRLTVKSDELK 763
            VQDEVLAHRLGL+PI VDPRLF+Y S+ D PNE NTIVF+LH  C +G PRLTV S  L 
Sbjct: 139  VQDEVLAHRLGLVPIRVDPRLFKY-SDKDAPNENNTIVFRLHACCERGKPRLTVTSKALT 197

Query: 762  WLPNGSGFELETGHSQSDKKSGSKTYTSFSCSQDSLP-EFANDPISPKHDDIIISKLGPG 586
            WLPNGS F L +  S S+ K   KTYTSFSCSQ++L  EF+N+PI PK  DII+++LGPG
Sbjct: 198  WLPNGSEFPLVSDKSVSNSKP--KTYTSFSCSQNTLSKEFSNNPIGPKDSDIILARLGPG 255

Query: 585  QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVELLQEVEGKLAKDLVEKCPVNVFDIE 406
            QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEV L++E+E +LA++L +KCPVNVFDIE
Sbjct: 256  QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLMEEIEDELAEELEKKCPVNVFDIE 315

Query: 405  DIAEGKKRAFVARPRACTLCRECIRGEDWENRVALRRVKDHFIFTIESAGALPPEVLFTE 226
            DIA GKKRA VARPR CTLCRECIRG+ WE RVALRRVKDHFIF IES GALPPEVLFTE
Sbjct: 316  DIA-GKKRATVARPRDCTLCRECIRGDAWEKRVALRRVKDHFIFKIESTGALPPEVLFTE 374

Query: 225  AVKILEDKCHRVITELS 175
            AVKILEDKC R+I ELS
Sbjct: 375  AVKILEDKCERLIAELS 391


>ref|XP_002300385.1| predicted protein [Populus trichocarpa] gi|222847643|gb|EEE85190.1|
            predicted protein [Populus trichocarpa]
          Length = 390

 Score =  525 bits (1352), Expect = e-146
 Identities = 267/376 (71%), Positives = 306/376 (81%), Gaps = 1/376 (0%)
 Frame = -3

Query: 1299 DMPDVPMGQLPPHLQQQRTRVLCASDAPTHTESIQYSGAYAAVGVDNSLLMNHFVENFRV 1120
            ++ DV  GQLPPH+++Q TRV C  DAPT+TE++QYSG+YA++GVDNSL ++ F ENFR+
Sbjct: 30   NLKDVERGQLPPHIRKQGTRVYCKPDAPTNTETLQYSGSYASMGVDNSLRLDSFRENFRI 89

Query: 1119 EVIRIGKASKDDLEDKKDSMEFDMIGIDASLANAFRRILISEVPTMAIEKVLIANNTSLV 940
            +VI + K          D MEFDMIGIDA++ANAFRRILISEVPTMAIEKV IANNTS++
Sbjct: 90   KVIALDK----------DKMEFDMIGIDAAVANAFRRILISEVPTMAIEKVFIANNTSVI 139

Query: 939  QDEVLAHRLGLIPIEVDPRLFEYMSENDTPNEKNTIVFKLHVRCTKGSPRLTVKSDELKW 760
            QDEVLAHRLGLIPI+VDPRLFEY+S NDTPNEKNTIV KLH RC +G PR +V S ELKW
Sbjct: 140  QDEVLAHRLGLIPIKVDPRLFEYLSANDTPNEKNTIVLKLHARCNRGQPRCSVYSQELKW 199

Query: 759  LPNGSGFELETGHSQSDKKSGSKTYTSFSCSQDSLPEFANDPISPKHDDIIISKLGPGQE 580
            LPNGS F  E+   + D K    TYTSFSC QDSLPEFA +PIS   +DII++KLGPGQE
Sbjct: 200  LPNGSEFAKES--EKPDSK--PSTYTSFSCGQDSLPEFAGNPISTV-EDIILAKLGPGQE 254

Query: 579  IELEAHAVKGMGKTHAKWSPVATAWYRMLPEVELLQEVEGKLAKDLVEKCPVNVFDIEDI 400
            IELEAHAVKGMGKTHAKWSPV TAWYRM PEV LL+ ++G+ A++L+ KCP  VFDIED 
Sbjct: 255  IELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENIKGEDAEELIRKCPSGVFDIEDT 314

Query: 399  AEGKKRAFVARPRACTLCRECIRG-EDWENRVALRRVKDHFIFTIESAGALPPEVLFTEA 223
               KK+A VA  RACTLCRECIRG E+WE RVAL RVKDHFIFTIES GALPPEVLFTEA
Sbjct: 315  GNAKKKAIVADSRACTLCRECIRGDEEWEKRVALHRVKDHFIFTIESTGALPPEVLFTEA 374

Query: 222  VKILEDKCHRVITELS 175
            VKILE KC RVITELS
Sbjct: 375  VKILEAKCERVITELS 390


>ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
            gi|255637183|gb|ACU18922.1| unknown [Glycine max]
          Length = 388

 Score =  514 bits (1324), Expect = e-143
 Identities = 264/378 (69%), Positives = 310/378 (82%), Gaps = 2/378 (0%)
 Frame = -3

Query: 1302 LDMPDVPMGQLPPHLQQQRTRVLCASDAPTHTESIQYSGAYAAVGVDNSLLMNHFVENFR 1123
            L + +VP  +LPPHL+  +TRVLC +DAP HT+++QYSGAYA +GVDNS+ ++ F ENF+
Sbjct: 24   LSLDNVP-SKLPPHLELFKTRVLCNNDAPVHTDTVQYSGAYAILGVDNSVRLDSFCENFK 82

Query: 1122 VEVIRIGKASKDDLEDKKDSMEFDMIGIDASLANAFRRILISEVPTMAIEKVLIANNTSL 943
            VEV R+  +           +EFDMIGID ++ANAFRRILI+EVPTMAIE+V IANNTS+
Sbjct: 83   VEVKRLTDSD----------IEFDMIGIDPAIANAFRRILIAEVPTMAIERVYIANNTSV 132

Query: 942  VQDEVLAHRLGLIPIEVDPRLFEYMSE-NDTPNEKNTIVFKLHVRCTKGSPRLTVKSDEL 766
            VQDEVL+HRLGLIPI  DPRLFEY     D  NEKNTIVFKLHVRC  G PR+TVKSD+L
Sbjct: 133  VQDEVLSHRLGLIPIRADPRLFEYPENAGDDKNEKNTIVFKLHVRCQVGQPRITVKSDKL 192

Query: 765  KWLPNGSGFELETGHSQSDKKSGSKTYTSFSCSQDSLPEFANDPISPKHDDIIISKLGPG 586
            KWLPNGS  EL     + +  S  KT+TSF+CSQDSLPEF+N+ I   + DII++KLGPG
Sbjct: 193  KWLPNGS--ELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSIGLTYSDIILAKLGPG 250

Query: 585  QEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVELLQEVEGKLAKDLVEKCPVNVFDIE 406
            QEIELEAHAVKG+GKTHAKWSPVATAWYRMLPEV LL+ VE +LA++L  KCPVNVFDIE
Sbjct: 251  QEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAVEDELAEELKNKCPVNVFDIE 310

Query: 405  DIAEGKKRAFVARPRACTLCRECIR-GEDWENRVALRRVKDHFIFTIESAGALPPEVLFT 229
            DI +GK+RA VARPR CTLCRECIR G++WE+RV+LRRVK+HFIFTIES GALPPEVLFT
Sbjct: 311  DIGKGKRRAKVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFT 370

Query: 228  EAVKILEDKCHRVITELS 175
            EAVKILEDKC RVITELS
Sbjct: 371  EAVKILEDKCERVITELS 388