BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022328
         (838 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat...   216   7e-54
ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containi...   214   2e-53
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi...   211   1e-52
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ...   211   2e-52
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   206   4e-51

>ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  216 bits (549), Expect = 7e-54
 Identities = 111/204 (54%), Positives = 144/204 (70%)
 Frame = -3

Query: 614 LHHLLSCKSMKELKQIHSQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDP 435
           L   +S K+++  KQ+H+++ ++G+  N D   KL  F +  +S  L  A  +F      
Sbjct: 65  LESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNS--LRNAHHLFDKIPKG 122

Query: 434 SLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIH 255
           +LF++N+LI+ +   G     +SLY Q+ E GL PD+FT PFVLKACS LS + +GR IH
Sbjct: 123 NLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIH 182

Query: 254 ENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPD 75
           E V+R+GWE DVFVG+ALVDMYA+CGCV  AR VFDKI  RD VLWNSMLAAY+QNGHPD
Sbjct: 183 ERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPD 242

Query: 74  EAISLCREMALTGLRPTVATLVTV 3
           E++SLC EMA  G+RPT ATLVTV
Sbjct: 243 ESLSLCCEMAAKGVRPTEATLVTV 266



 Score = 83.2 bits (204), Expect = 7e-14
 Identities = 63/244 (25%), Positives = 115/244 (47%), Gaps = 6/244 (2%)
 Frame = -3

Query: 761 HLKEKVSW--MMLWNVPL----YRSTYPLSISLKYCYHFFSSFTRKIPRLTKEECLHHLL 600
           HL +K+    + LWNV +    +   +  +ISL   YH    +  K    T    L    
Sbjct: 114 HLFDKIPKGNLFLWNVLIRAYAWNGPHETAISL---YHQMLEYGLKPDNFTLPFVLKACS 170

Query: 599 SCKSMKELKQIHSQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDPSLFIY 420
           +  ++ E + IH ++ R G    RD      +       G +  A  +F    D    ++
Sbjct: 171 ALSTIGEGRVIHERVIRSGWE--RDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLW 228

Query: 419 NLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIHENVVR 240
           N ++  + + G   + +SL  ++   G+ P   T   V+ + + ++ L  GR+IH    R
Sbjct: 229 NSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWR 288

Query: 239 TGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPDEAISL 60
            G++ +  V +AL+DMYA+CG V+ A  +F+++  + VV WN+++  Y+ +G   EA+ L
Sbjct: 289 HGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDL 348

Query: 59  CREM 48
              M
Sbjct: 349 FERM 352



 Score = 70.5 bits (171), Expect = 4e-10
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 4/112 (3%)
 Frame = -3

Query: 335 FPDS----FTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVE 168
           FP S    + Y  +L++C    AL+ G+ +H  + + G   ++ + + LV+ Y+ C  + 
Sbjct: 51  FPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLR 110

Query: 167 SARQVFDKISARDVVLWNSMLAAYSQNGHPDEAISLCREMALTGLRPTVATL 12
           +A  +FDKI   ++ LWN ++ AY+ NG  + AISL  +M   GL+P   TL
Sbjct: 111 NAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTL 162


>ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  214 bits (545), Expect = 2e-53
 Identities = 109/204 (53%), Positives = 143/204 (70%), Gaps = 1/204 (0%)
 Frame = -3

Query: 614 LHHLLSCKSMKELKQIHSQIFRIGLNQNRDALQKLT-VFCTNPDSGNLHYAEKIFKYTHD 438
           L   ++ K++K  KQ+H+Q+   G   +     KL  ++C      +L  A  +F     
Sbjct: 82  LQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCV---CDSLSSARLLFDRIPK 138

Query: 437 PSLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDI 258
            ++F++N+LI+ +   G     V LY Q+ + GL PD+FT+PFVLKAC+ LSA++ GR+I
Sbjct: 139 HNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREI 198

Query: 257 HENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHP 78
           HE+VV+TGWE DVFVG+AL+DMYA+CGCV SAR+VFDKI  RD VLWNSMLAAYSQNGHP
Sbjct: 199 HEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHP 258

Query: 77  DEAISLCREMALTGLRPTVATLVT 6
           D  +SLC EM LTGLRPT ATLVT
Sbjct: 259 DACLSLCSEMVLTGLRPTEATLVT 282



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 2/232 (0%)
 Frame = -3

Query: 737 MMLWNVPL--YRSTYPLSISLKYCYHFFSSFTRKIPRLTKEECLHHLLSCKSMKELKQIH 564
           + LWNV +  Y    P   +++  Y  F  +       T    L    +  +++  ++IH
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFD-YGLVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 563 SQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDPSLFIYNLLIKEFTKKGI 384
             + + G    +D      +       G +  A ++F         ++N ++  +++ G 
Sbjct: 200 EHVVQTGWE--KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGH 257

Query: 383 LRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSA 204
               +SL  ++   GL P   T    + A +  +AL QGR++H    R  +ES   V +A
Sbjct: 258 PDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTA 317

Query: 203 LVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPDEAISLCREM 48
           LVDMYA+CG V  AR +F+++  + VV WN+M+  Y+ +GH  EA+ L  EM
Sbjct: 318 LVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM 369



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 33/104 (31%), Positives = 56/104 (53%)
 Frame = -3

Query: 338 LFPDSFTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVESAR 159
           L P    Y  +L++C    A++ G+ +H  V   G+  D  + + LV++Y  C  + SAR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 158 QVFDKISARDVVLWNSMLAAYSQNGHPDEAISLCREMALTGLRP 27
            +FD+I   ++ LWN ++  Y+ NG  + A+ L  +M   GL P
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVP 174


>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  211 bits (538), Expect = 1e-52
 Identities = 112/240 (46%), Positives = 159/240 (66%), Gaps = 9/240 (3%)
 Frame = -3

Query: 698 PLSI--SLKYCYHFFSSFTRKIP------RLTKEECLHHLLSCKSMKELKQIHSQIFRIG 543
           PLSI   +++    FSS    +P      +LTK+ C+  L +CKSM +LKQI SQIFRIG
Sbjct: 111 PLSIIRRVQFISRHFSSSPHLVPVLLRISKLTKKSCIECLRNCKSMDQLKQIQSQIFRIG 170

Query: 542 LNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDPSLFIYNLLIKEFTKKGILRKVVSL 363
           L  +RD + KL  FC +   GNL YAEKIF Y  DPSLF+YN+++K + K+GILRKV+ L
Sbjct: 171 LEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLL 230

Query: 362 YGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYAR 183
           + QLRE GL+PD FTYPFVLKA   L  ++QG  +   +V+TG + D +V ++L+DMY  
Sbjct: 231 FQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYE 290

Query: 182 CGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPDEAISLCREMALTG-LRPTVATLVT 6
              VE+A+++FD+++ RD V WN M++ Y +    ++AI+  REM   G  +P  AT+V+
Sbjct: 291 LSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVS 350



 Score = 93.2 bits (230), Expect = 6e-17
 Identities = 47/160 (29%), Positives = 86/160 (53%)
 Frame = -3

Query: 482 GNLHYAEKIFKYTHDPSLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVL 303
           G+L  A  +F  +    + ++  +I  + +       V+L+ +++   + PD FT   +L
Sbjct: 424 GDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLL 483

Query: 302 KACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVV 123
             C++L AL+QG+ IH  +       DV VG+AL++MY++CGCV+ + ++F ++  +D  
Sbjct: 484 TGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTA 543

Query: 122 LWNSMLAAYSQNGHPDEAISLCREMALTGLRPTVATLVTV 3
            W S++   + NG   EA+ L  EM   G +P   T + V
Sbjct: 544 SWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGV 583



 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 32/191 (16%)
 Frame = -3

Query: 479 NLHYAEKIFKYTHDPSLFIYNLLIKEFTKKGILRKVVSLYGQLR-EGGLFPDSFTYPFVL 303
           N+  A+K+F          +N++I  + +       ++ + +++ EG   PD  T    L
Sbjct: 293 NVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTL 352

Query: 302 KACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKIS----- 138
            AC+ L  L+ G +IH N VR        + +AL+DMYA+CGC+  AR +FD++S     
Sbjct: 353 SACTALKNLELGDEIH-NYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVI 411

Query: 137 --------------------------ARDVVLWNSMLAAYSQNGHPDEAISLCREMALTG 36
                                      RDVVLW +M+  Y Q  H D+A++L REM +  
Sbjct: 412 CWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQR 471

Query: 35  LRPTVATLVTV 3
           ++P   T+VT+
Sbjct: 472 VKPDKFTVVTL 482


>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
           helical [Medicago truncatula]
           gi|355486783|gb|AES67986.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  211 bits (537), Expect = 2e-52
 Identities = 106/204 (51%), Positives = 141/204 (69%)
 Frame = -3

Query: 614 LHHLLSCKSMKELKQIHSQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDP 435
           L   +  K++   KQ+H+Q + +G+  N+D   KL        S +L  A  +F      
Sbjct: 54  LQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAV--SNSLLNARNLFDKIPKQ 111

Query: 434 SLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIH 255
           +LF++N+LI+ +   G     + LY ++ + GL PD+FT PFVLKACS LSA+ +GR IH
Sbjct: 112 NLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIH 171

Query: 254 ENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPD 75
           E V+++GWE D+FVG+AL+DMYA+CGCV  A +VFDKI  RD VLWNSMLAAY+QNGHPD
Sbjct: 172 EYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPD 231

Query: 74  EAISLCREMALTGLRPTVATLVTV 3
           E+ISLCREMA  G+RPT ATLVTV
Sbjct: 232 ESISLCREMAANGVRPTEATLVTV 255



 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 4/249 (1%)
 Frame = -3

Query: 737 MMLWNVPL----YRSTYPLSISLKYCYHFFSSFTRKIPRLTKEECLHHLLSCKSMKELKQ 570
           + LWNV +    +   +  +I L   YH    +  +    T    L    +  ++ E + 
Sbjct: 113 LFLWNVLIRGYAWNGPHDNAIIL---YHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 569 IHSQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYTHDPSLFIYNLLIKEFTKK 390
           IH  + + G    RD      +       G +  A ++F         ++N ++  + + 
Sbjct: 170 IHEYVIKSGWE--RDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQN 227

Query: 389 GILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVG 210
           G   + +SL  ++   G+ P   T   V+ + + ++ L  GR+IH    R G++S+  V 
Sbjct: 228 GHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVK 287

Query: 209 SALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHPDEAISLCREMALTGLR 30
           +AL+DMYA+CG V+ A  +F+++  + VV WN+++  Y+ +G    A+ L  +M     R
Sbjct: 288 TALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-R 346

Query: 29  PTVATLVTV 3
           P   T V V
Sbjct: 347 PDHITFVGV 355



 Score = 63.5 bits (153), Expect = 5e-08
 Identities = 35/104 (33%), Positives = 55/104 (52%)
 Frame = -3

Query: 323 FTYPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDK 144
           + Y  +L++C    AL  G+ +H      G   +  + + LV +YA    + +AR +FDK
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 143 ISARDVVLWNSMLAAYSQNGHPDEAISLCREMALTGLRPTVATL 12
           I  +++ LWN ++  Y+ NG  D AI L  +M   GLRP   TL
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTL 151


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  206 bits (525), Expect = 4e-51
 Identities = 105/203 (51%), Positives = 144/203 (70%), Gaps = 4/203 (1%)
 Frame = -3

Query: 605 LLSC---KSMKELKQIHSQIFRIGLNQNRDALQKLT-VFCTNPDSGNLHYAEKIFKYTHD 438
           L SC   K+++  KQ+H++I ++G++ N     KL  ++C      N H    +F     
Sbjct: 8   LQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHL---LFDRISK 64

Query: 437 PSLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGRDI 258
            +LF++N++I+ +   G     +SLY Q+R+ GL PD FT+PFVLKACS LSA+++G+ I
Sbjct: 65  RNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKI 124

Query: 257 HENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNGHP 78
           H++V+R+G ESDVFVG+AL+DMYA+CGCVESARQVFDKI  RDVV WNSMLA YSQNG P
Sbjct: 125 HKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQP 184

Query: 77  DEAISLCREMALTGLRPTVATLV 9
           DE+++LCR MA  GL+PT  T V
Sbjct: 185 DESLALCRVMAFNGLKPTEGTFV 207



 Score =  101 bits (251), Expect = 2e-19
 Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 7/252 (2%)
 Frame = -3

Query: 782 CTS*TN*HLK-EKVSW--MMLWNVPL----YRSTYPLSISLKYCYHFFSSFTRKIPRLTK 624
           C S TN HL  +++S   + LWNV +    +   Y L+ISL Y    +     K    T 
Sbjct: 49  CNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKF---TF 105

Query: 623 EECLHHLLSCKSMKELKQIHSQIFRIGLNQNRDALQKLTVFCTNPDSGNLHYAEKIFKYT 444
              L    +  +M+E K+IH  + R GL    D      +       G +  A ++F   
Sbjct: 106 PFVLKACSALSAMEEGKKIHKDVIRSGLES--DVFVGAALIDMYAKCGCVESARQVFDKI 163

Query: 443 HDPSLFIYNLLIKEFTKKGILRKVVSLYGQLREGGLFPDSFTYPFVLKACSKLSALQQGR 264
            +  +  +N ++  +++ G   + ++L   +   GL P   T+   + A +    L QG+
Sbjct: 164 DERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGK 223

Query: 263 DIHENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKISARDVVLWNSMLAAYSQNG 84
           ++H    R G+ES+  V +AL+DMYA+ G V  AR +F+ +  + VV WN+M+  Y+ +G
Sbjct: 224 ELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHG 283

Query: 83  HPDEAISLCREM 48
           H +EA+ L +EM
Sbjct: 284 HANEALDLFKEM 295



 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 32/97 (32%), Positives = 56/97 (57%)
 Frame = -3

Query: 317 YPFVLKACSKLSALQQGRDIHENVVRTGWESDVFVGSALVDMYARCGCVESARQVFDKIS 138
           Y  +L++C    A++ G+ +H  + + G   +  + + LV++Y  C  + +A  +FD+IS
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 137 ARDVVLWNSMLAAYSQNGHPDEAISLCREMALTGLRP 27
            R++ LWN M+  Y+ NG  + AISL  +M   GL P
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVP 100