BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00022237
         (1343 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containi...   583   0.0  
ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containi...   561   0.0  
ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containi...   551   0.0  
ref|XP_002328140.1| predicted protein [Populus trichocarpa] gi|2...   568   e-178
ref|XP_002875235.1| pentatricopeptide repeat-containing protein ...   541   e-177

>ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
            mitochondrial [Vitis vinifera]
          Length = 623

 Score =  583 bits (1502), Expect(2) = 0.0
 Identities = 274/368 (74%), Positives = 320/368 (86%)
 Frame = -2

Query: 1111 KGVQPNMFTFSSVLSARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFR 932
            +GV+PNMFT+SSVL A DGL  L QLHCGIIK GL+SD+FVRSALID+YSKW ++DN   
Sbjct: 149  EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALG 208

Query: 931  VFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVL 752
            VF+EM T DLVVWNSIIG FAQN +G+EAL+LFK MKR GF A+QATLTSVLRACTG+ L
Sbjct: 209  VFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLAL 268

Query: 751  LELGRQVHAHVMKFKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMIAGLA 572
            LELGRQVH HV+KF +DLI+NNAL+DMYCKCGSL+DA  AF RM E+DVISWSTM+AGLA
Sbjct: 269  LELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLA 328

Query: 571  LNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGR 392
             NG+S  AL+LFESMK SG  PNYIT++GVLFACSHAGL+E GW YFRSMK+L+G+DPGR
Sbjct: 329  QNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGR 388

Query: 391  EHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLLGACRVHKNVDLATFVANQILK 212
            EHYGC++DLLGRAG+LDEAV+ IH MECEPD+V WRTLLGACRVH+NVDLA + A +I++
Sbjct: 389  EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448

Query: 211  LEPHDEGTYILLSNIYANSQRWEDVAKVRKNMKRRGLKKEPGCSWIEVDKQVHAFILGDE 32
            LEP D GTYILLSNIYAN+QRWEDVA+VRK M  RG++K PGCSWIEVDKQ+H FILGD 
Sbjct: 449  LEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDT 508

Query: 31   SHPQTDNI 8
            SHP+ + I
Sbjct: 509  SHPKIEEI 516



 Score =  112 bits (280), Expect(2) = 0.0
 Identities = 53/78 (67%), Positives = 67/78 (85%)
 Frame = -3

Query: 1341 EEGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAF 1162
            +EGK VH+H++  GY PK F+ N LLNMYVKFNLL+EA+ LFD+MPERNVVSWTTMISA+
Sbjct: 72   QEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY 131

Query: 1161 ANCKLNEEAMKYLVLMQR 1108
            +N KLN++A+K L+LM R
Sbjct: 132  SN-KLNDKALKCLILMFR 148



 Score =  126 bits (316), Expect = 1e-26
 Identities = 88/283 (31%), Positives = 147/283 (51%), Gaps = 5/283 (1%)
 Frame = -2

Query: 1108 GVQPNMFTFSSVL---SARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNG 938
            GV  +  T+S ++   SAR  ++   ++H  I   G +  +FV + L+++Y K+  ++  
Sbjct: 50   GVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEA 109

Query: 937  FRVFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGM 758
              +F+EM   ++V W ++I  ++   N D+AL     M R G   N  T +SVLRAC G+
Sbjct: 110  EDLFDEMPERNVVSWTTMISAYSNKLN-DKALKCLILMFREGVRPNMFTYSSVLRACDGL 168

Query: 757  VLLELGRQVHAHVMK--FKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMI 584
              L   RQ+H  ++K   + D+ V +AL+D+Y K   LD+A   FD M  RD++ W+++I
Sbjct: 169  PNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSII 225

Query: 583  AGLALNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGI 404
             G A N    +AL LF+ MK +G   +  T+  VL AC+   LLE G    +    +   
Sbjct: 226  GGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELG---RQVHVHVLKF 282

Query: 403  DPGREHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLL 275
            D        ++D+  + G L++A      M  E D + W T++
Sbjct: 283  DQDLILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMV 324



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 62/221 (28%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
 Frame = -2

Query: 847 ALDLFKSMKRVGFPANQATLTSVLRACTGMVLLELGRQVHAHVM--KFKRDLIVNNALLD 674
           A+    +M+R G  A+  T + +++ C+    ++ G++VH H+    ++  + V N LL+
Sbjct: 39  AMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLN 98

Query: 673 MYCKCGSLDDARCAFDRMSERDVISWSTMIAGLALNGHSIDALKLFESMKASGPTPNYIT 494
           MY K   L++A   FD M ER+V+SW+TMI+  + N  +  ALK    M   G  PN  T
Sbjct: 99  MYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRPNMFT 157

Query: 493 MVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGREHYGCIVDLLGRAGKLDEAVQFIHNM 314
              VL AC     L    C         G++        ++D+  +   LD A+     M
Sbjct: 158 YSSVLRACDGLPNLRQLHCGIIKT----GLESDVFVRSALIDVYSKWSDLDNALGVFDEM 213

Query: 313 ECEPDAVIWRTLLG----------ACRVHKNVDLATFVANQ 221
               D V+W +++G          A  + K +  A F+A+Q
Sbjct: 214 PTR-DLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQ 253


>ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
            mitochondrial-like [Cucumis sativus]
            gi|449475689|ref|XP_004154524.1| PREDICTED:
            pentatricopeptide repeat-containing protein At2g03880,
            mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  561 bits (1445), Expect(2) = 0.0
 Identities = 271/369 (73%), Positives = 312/369 (84%), Gaps = 1/369 (0%)
 Frame = -2

Query: 1111 KGVQPNMFTFSSVLSARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFR 932
            +GV+PNM+T+SSVL A DGL  L QLH  I+K GL+SD+FVRSALID YSK GE  +   
Sbjct: 111  EGVRPNMYTYSSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALN 170

Query: 931  VFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVL 752
            VFNEM+TGDLVVWNSIIG FAQN +GDE L L+K MKR  F A+Q+TLTSVLRACTG+ L
Sbjct: 171  VFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLAL 230

Query: 751  LELGRQVHAHVMKFKRDLIVNNALLDMYCKCGSLDDARCAFDRM-SERDVISWSTMIAGL 575
            LELGRQVH HV+K+ +DLI+NNALLDMYCKCGSL+DA   F RM +E+DVISWSTMIAGL
Sbjct: 231  LELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGL 290

Query: 574  ALNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPG 395
            A NG S DALKLFE+MK+ GP PNYIT++GVLFACSHAGL+ DGW YF+SMK  +GIDPG
Sbjct: 291  AQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPG 350

Query: 394  REHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLLGACRVHKNVDLATFVANQIL 215
            REHYGCI+DLLGRAGKLDEAV+ IH M  EPDAV WR LLGACRVHKNVDLA + A +IL
Sbjct: 351  REHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEIL 410

Query: 214  KLEPHDEGTYILLSNIYANSQRWEDVAKVRKNMKRRGLKKEPGCSWIEVDKQVHAFILGD 35
            KL+P D GTYILLSNIYANSQ+WEDVA+VR+ M+ RG+KK+PGCSWIEV KQVHAFILGD
Sbjct: 411  KLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGD 470

Query: 34   ESHPQTDNI 8
             SHP+ + I
Sbjct: 471  NSHPRIEEI 479



 Score =  115 bits (289), Expect(2) = 0.0
 Identities = 52/78 (66%), Positives = 66/78 (84%)
 Frame = -3

Query: 1341 EEGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAF 1162
            ++ +LVH+HV+SNGY PKTFL N L+NMYVKF LLDEA  LFD+MP+RNVVSWTTMISA+
Sbjct: 33   QQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAY 92

Query: 1161 ANCKLNEEAMKYLVLMQR 1108
            +N  LN +A+ +L+LM R
Sbjct: 93   SNSNLNHKALDFLILMLR 110



 Score =  121 bits (304), Expect = 4e-25
 Identities = 79/276 (28%), Positives = 137/276 (49%), Gaps = 5/276 (1%)
 Frame = -2

Query: 1087 TFSSVLSA---RDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFRVFNEM 917
            T+S ++     R  ++    +H  +   G +   F+ + LI++Y K+G +D    +F+EM
Sbjct: 18   TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77

Query: 916  VTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVLLELGR 737
               ++V W ++I  ++ +    +ALD    M R G   N  T +SVLRAC G++ L   R
Sbjct: 78   PDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---R 134

Query: 736  QVHAHVMK--FKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMIAGLALNG 563
            Q+H  ++K   + D+ V +AL+D Y K G   DA   F+ M   D++ W+++I G A N 
Sbjct: 135  QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNS 194

Query: 562  HSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGREHY 383
               + L L++ MK +    +  T+  VL AC+   LLE G    +    +   D      
Sbjct: 195  DGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELG---RQVHVHVLKYDQDLILN 251

Query: 382  GCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLL 275
              ++D+  + G L++A      M  E D + W T++
Sbjct: 252  NALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMI 287


>ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
            mitochondrial-like [Glycine max]
          Length = 854

 Score =  551 bits (1419), Expect(2) = 0.0
 Identities = 261/368 (70%), Positives = 310/368 (84%)
 Frame = -2

Query: 1108 GVQPNMFTFSSVLSARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFRV 929
            GV PNMFTFSSVL A + L  L QLH  I+K GL+SD+FVRSALID+YSK GE+    +V
Sbjct: 381  GVMPNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKV 440

Query: 928  FNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVLL 749
            F EM+TGD VVWNSII  FAQ+ +GDEAL L+KSM+RVGFPA+Q+TLTSVLRACT + LL
Sbjct: 441  FREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLL 500

Query: 748  ELGRQVHAHVMKFKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMIAGLAL 569
            ELGRQ H HV+KF +DLI+NNALLDMYCKCGSL+DA+  F+RM+++DVISWSTMIAGLA 
Sbjct: 501  ELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQ 560

Query: 568  NGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGRE 389
            NG S++AL LFESMK  GP PN+IT++GVLFACSHAGL+ +GW YFRSM  LYGIDPGRE
Sbjct: 561  NGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGRE 620

Query: 388  HYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLLGACRVHKNVDLATFVANQILKL 209
            HYGC++DLLGRA KLD+ V+ IH M CEPD V WRTLL ACR  +NVDLAT+ A +ILKL
Sbjct: 621  HYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKL 680

Query: 208  EPHDEGTYILLSNIYANSQRWEDVAKVRKNMKRRGLKKEPGCSWIEVDKQVHAFILGDES 29
            +P D G Y+LLSNIYA S+RW DVA+VR+ MK+RG++KEPGCSWIEV+KQ+HAFILGD+S
Sbjct: 681  DPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKS 740

Query: 28   HPQTDNIN 5
            HPQ D IN
Sbjct: 741  HPQIDEIN 748



 Score =  120 bits (301), Expect(2) = 0.0
 Identities = 55/77 (71%), Positives = 66/77 (85%)
 Frame = -3

Query: 1338 EGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAFA 1159
            EGK VH+H++SNGY PKTFL NIL+NMYVKFNLL+EA  LFD+MPERNVVSWTTMISA++
Sbjct: 303  EGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYS 362

Query: 1158 NCKLNEEAMKYLVLMQR 1108
            N +LN+ AM+ L  M R
Sbjct: 363  NAQLNDRAMRLLAFMFR 379



 Score =  115 bits (289), Expect = 2e-23
 Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 5/284 (1%)
 Frame = -2

Query: 1111 KGVQPNMFTFSSVLS---ARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDN 941
            +GV  +  T+S ++    A   +R   ++H  I   G     F+ + LI++Y K+  ++ 
Sbjct: 279  RGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEE 338

Query: 940  GFRVFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTG 761
               +F++M   ++V W ++I  ++     D A+ L   M R G   N  T +SVLRAC  
Sbjct: 339  AQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACER 398

Query: 760  MVLLELGRQVHAHVMK--FKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTM 587
            +  L   +Q+H+ +MK   + D+ V +AL+D+Y K G L +A   F  M   D + W+++
Sbjct: 399  LYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSI 455

Query: 586  IAGLALNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYG 407
            IA  A +    +AL L++SM+  G   +  T+  VL AC+   LLE G    ++   +  
Sbjct: 456  IAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELG---RQAHVHVLK 512

Query: 406  IDPGREHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLL 275
             D        ++D+  + G L++A +FI N   + D + W T++
Sbjct: 513  FDQDLILNNALLDMYCKCGSLEDA-KFIFNRMAKKDVISWSTMI 555



 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 3/223 (1%)
 Frame = -2

Query: 847 ALDLFKSMKRVGFPANQATLTSVLRACTGMVLLELGRQVHAHVMK--FKRDLIVNNALLD 674
           A+ +  SM+R G  A+  T + +++ C     +  G++VH H+    +     + N L++
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 673 MYCKCGSLDDARCAFDRMSERDVISWSTMIAGLALNGHSIDALKLFESMKASGPTPNYIT 494
           MY K   L++A+  FD+M ER+V+SW+TMI+  +    +  A++L   M   G  PN  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 493 MVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGREHYGCIVDLLGRAGKLDEAVQFIHNM 314
              VL AC     L+       S     G++        ++D+  + G+L EA++    M
Sbjct: 389 FSSVLRACERLYDLKQ----LHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREM 444

Query: 313 ECEPDAVIWRTLLGACRVHKNVDLATFVANQILKLE-PHDEGT 188
               D+V+W +++ A   H + D A  +   + ++  P D+ T
Sbjct: 445 -MTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQST 486


>ref|XP_002328140.1| predicted protein [Populus trichocarpa] gi|222837655|gb|EEE76020.1|
            predicted protein [Populus trichocarpa]
          Length = 534

 Score =  568 bits (1464), Expect(2) = e-178
 Identities = 272/370 (73%), Positives = 312/370 (84%)
 Frame = -2

Query: 1111 KGVQPNMFTFSSVLSARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFR 932
            +GV+PNMFT+SSVL A DGL  L QLHC IIK GLDSD+FVRSALID+YS+WGE++N  R
Sbjct: 60   EGVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALR 119

Query: 931  VFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVL 752
            VF+EMVTGDLVVW+SII  FAQN +GDEAL LFK MKR GF A Q TLTSVLRACTG+ L
Sbjct: 120  VFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLAL 179

Query: 751  LELGRQVHAHVMKFKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMIAGLA 572
            LELGRQVH HV+K+ +DLI+NNALLDMYCKCGSL+DA   F RM E+DVISWSTMIAGLA
Sbjct: 180  LELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 571  LNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGR 392
             NG+S +ALKLFESMK  G  PNY+T+VGVLFACSHAGL+E+G  YF SMK L+GIDPGR
Sbjct: 240  QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGR 299

Query: 391  EHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLLGACRVHKNVDLATFVANQILK 212
            EHYGC++DLLGRAG+L EAV  I+ MECEPDAV WR LL ACRVH+NVD+A   A QIL+
Sbjct: 300  EHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILR 359

Query: 211  LEPHDEGTYILLSNIYANSQRWEDVAKVRKNMKRRGLKKEPGCSWIEVDKQVHAFILGDE 32
            L+P D GTY+LLSNIYAN+QRW DVA+VR+ M  RG+KKEPGCSWIEV KQ+HAFILGD 
Sbjct: 360  LDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDR 419

Query: 31   SHPQTDNINM 2
            SHPQ   IN+
Sbjct: 420  SHPQIREINI 429



 Score = 84.3 bits (207), Expect(2) = e-178
 Identities = 39/59 (66%), Positives = 51/59 (86%)
 Frame = -3

Query: 1284 FLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAFANCKLNEEAMKYLVLMQR 1108
            FL NIL+NMYVKF LL +A  +FD+MP+RNVVSWTTMISA++  KLN++A+++LVLM R
Sbjct: 1    FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR 59



 Score =  120 bits (301), Expect = 8e-25
 Identities = 83/269 (30%), Positives = 140/269 (52%), Gaps = 4/269 (1%)
 Frame = -2

Query: 994 FVRSALIDIYSKWGEMDNGFRVFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRV 815
           F+ + LI++Y K+G + +   VF++M   ++V W ++I  ++     D+AL+    M R 
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 814 GFPANQATLTSVLRACTGMVLLELGRQVHAHVMK--FKRDLIVNNALLDMYCKCGSLDDA 641
           G   N  T +SVLRAC G+  L   RQ+H  ++K     D+ V +AL+D+Y + G L++A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 640 RCAFDRMSERDVISWSTMIAGLALNGHSIDALKLFESMKASGPTPNYITMVGVLFACSHA 461
              FD M   D++ WS++IAG A N    +AL+LF+ MK +G      T+  VL AC+  
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 460 GLLEDGWCYFRSMKRLYGIDPGREHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRT 281
            LLE G    +    +   D        ++D+  + G L++A      M  E D + W T
Sbjct: 178 ALLELG---RQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVISWST 233

Query: 280 LLG--ACRVHKNVDLATFVANQILKLEPH 200
           ++   A   +    L  F + ++L ++P+
Sbjct: 234 MIAGLAQNGYSKEALKLFESMKVLGIKPN 262



 Score = 57.4 bits (137), Expect = 8e-06
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = -3

Query: 1341 EEGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAF 1162
            E G+ VH HV    Y     LNN LL+MY K   L++A+ +F +M E++V+SW+TMI+  
Sbjct: 181  ELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 1161 ANCKLNEEAMKYLVLMQ 1111
            A    ++EA+K    M+
Sbjct: 239  AQNGYSKEALKLFESMK 255


>ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297321073|gb|EFH51494.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 579

 Score =  541 bits (1394), Expect(2) = e-177
 Identities = 251/368 (68%), Positives = 312/368 (84%)
 Frame = -2

Query: 1108 GVQPNMFTFSSVLSARDGLRTLLQLHCGIIKCGLDSDIFVRSALIDIYSKWGEMDNGFRV 929
            GV+PN++T+SSVL A +G+  +  LHCGIIK GL+SD++VRSALID+++K GE ++   V
Sbjct: 109  GVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSV 168

Query: 928  FNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKRVGFPANQATLTSVLRACTGMVLL 749
            F+EMVTGD +VWNSIIG FAQN   D AL+LFK MKR GF A QATLTSVLRACTG+ LL
Sbjct: 169  FDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALL 228

Query: 748  ELGRQVHAHVMKFKRDLIVNNALLDMYCKCGSLDDARCAFDRMSERDVISWSTMIAGLAL 569
            ELG Q H H++K+ +DLI+NNAL+DMYCKCGSL+DAR  F++M ERDVI+WSTMI+GLA 
Sbjct: 229  ELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQ 288

Query: 568  NGHSIDALKLFESMKASGPTPNYITMVGVLFACSHAGLLEDGWCYFRSMKRLYGIDPGRE 389
            NG+S +ALKLFE MK+SG  PNYIT+VGVLFACSHAGLLEDGW YFRSMK+LYGI+PGRE
Sbjct: 289  NGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGRE 348

Query: 388  HYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWRTLLGACRVHKNVDLATFVANQILKL 209
            HYGC++DLLG+AGKLD+AV+ ++ MECEPDAV WRTLLGACRV +N+ LA + A +++ L
Sbjct: 349  HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIAL 408

Query: 208  EPHDEGTYILLSNIYANSQRWEDVAKVRKNMKRRGLKKEPGCSWIEVDKQVHAFILGDES 29
            +P D GTY +LSNIYANSQ+W+ V ++RK M+  G+KKEPGCSWIEV+KQ+HAFI+GDES
Sbjct: 409  DPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDES 468

Query: 28   HPQTDNIN 5
            HPQ   +N
Sbjct: 469  HPQIVEVN 476



 Score =  108 bits (270), Expect(2) = e-177
 Identities = 47/77 (61%), Positives = 66/77 (85%)
 Frame = -3

Query: 1338 EGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAFA 1159
            EG L+ +H+Y NG+ P  FL N+L+NMYVKFNLL++A +LFDQMP+RNV+SWTTMISA++
Sbjct: 31   EGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYS 90

Query: 1158 NCKLNEEAMKYLVLMQR 1108
             CK++++A++ LVLM R
Sbjct: 91   KCKIHQKALELLVLMLR 107



 Score =  119 bits (297), Expect = 2e-24
 Identities = 75/243 (30%), Positives = 132/243 (54%), Gaps = 2/243 (0%)
 Frame = -2

Query: 997 IFVRSALIDIYSKWGEMDNGFRVFNEMVTGDLVVWNSIIGRFAQNGNGDEALDLFKSMKR 818
           +F+ + LI++Y K+  +++  ++F++M   +++ W ++I  +++     +AL+L   M R
Sbjct: 48  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 107

Query: 817 VGFPANQATLTSVLRACTGMVLLELGRQVHAHVMK--FKRDLIVNNALLDMYCKCGSLDD 644
            G   N  T +SVLRAC GM  +   R +H  ++K   + D+ V +AL+D++ K G  +D
Sbjct: 108 DGVRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPED 164

Query: 643 ARCAFDRMSERDVISWSTMIAGLALNGHSIDALKLFESMKASGPTPNYITMVGVLFACSH 464
           A   FD M   D I W+++I G A N  S  AL+LF+ MK +G      T+  VL AC+ 
Sbjct: 165 ALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTG 224

Query: 463 AGLLEDGWCYFRSMKRLYGIDPGREHYGCIVDLLGRAGKLDEAVQFIHNMECEPDAVIWR 284
             LLE G    ++   +   D        +VD+  + G L++A +  + M+ E D + W 
Sbjct: 225 LALLELG---MQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWS 280

Query: 283 TLL 275
           T++
Sbjct: 281 TMI 283



 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 13/210 (6%)
 Frame = -2

Query: 829 SMKRVGFPANQATLTSVLRACTGMVLLELGRQV--HAHVMKFKRDLIVNNALLDMYCKCG 656
           S++  G  A+ AT + +++ C     +  G  +  H +    +  + + N L++MY K  
Sbjct: 3   SLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFN 62

Query: 655 SLDDARCAFDRMSERDVISWSTMIAGLALNGHSIDALKLFESMKASGPTPNYITMVGVLF 476
            L+DA   FD+M +R+VISW+TMI+  +       AL+L   M   G  PN  T   VL 
Sbjct: 63  LLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLR 122

Query: 475 ACS--------HAGLLEDGW---CYFRSMKRLYGIDPGREHYGCIVDLLGRAGKLDEAVQ 329
           AC+        H G++++G     Y RS                ++D+  + G+ ++A+ 
Sbjct: 123 ACNGMSDVRMLHCGIIKEGLESDVYVRS---------------ALIDVFAKLGEPEDALS 167

Query: 328 FIHNMECEPDAVIWRTLLGACRVHKNVDLA 239
               M    DA++W +++G    +   D+A
Sbjct: 168 VFDEM-VTGDAIVWNSIIGGFAQNSRSDVA 196



 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = -3

Query: 1341 EEGKLVHKHVYSNGYAPKTFLNNILLNMYVKFNLLDEADKLFDQMPERNVVSWTTMISAF 1162
            E G   H H+    Y     LNN L++MY K   L++A ++F+QM ER+V++W+TMIS  
Sbjct: 229  ELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGL 286

Query: 1161 ANCKLNEEAMKYLVLMQ 1111
            A    ++EA+K   LM+
Sbjct: 287  AQNGYSQEALKLFELMK 303