BLASTX nr result
ID: Cimicifuga21_contig00022155
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00022155
(1693 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256... 625 e-177
gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora] 617 e-174
ref|XP_002867001.1| transcription factor IIB family protein [Ara... 595 e-167
ref|NP_195383.1| transcription initiation factor TFIIB [Arabidop... 592 e-167
ref|XP_003611972.1| Transcription initiation factor IIB [Medicag... 592 e-166
>ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256546 [Vitis vinifera]
Length = 540
Score = 625 bits (1613), Expect = e-177
Identities = 343/519 (66%), Positives = 387/519 (74%), Gaps = 43/519 (8%)
Frame = +3
Query: 78 VRCPYCSGTQGRCTTTPLGRSITECCSCGRVVEERQTQTNDLFLLRAQDSPLCLVTSDLA 257
+RCPYC+ QGRC TT GR +TEC SCGRV+EERQ+Q + LF LRAQD+PLCLVTSDL
Sbjct: 1 MRCPYCTAAQGRCGTTGSGRLVTECTSCGRVMEERQSQIHHLFHLRAQDTPLCLVTSDLP 60
Query: 258 SIPSPSVVGLGPKNNEEDEDPFESTGFITTFSTWSLEPTPLFARSSLSFSGHLAELERCI 437
P E+++DPFESTGFI+ FSTWSL+P P+FARS LSFSGHLAELER +
Sbjct: 61 PPPPQQA----QTAQEQEDDPFESTGFISAFSTWSLDPCPIFARSCLSFSGHLAELERVL 116
Query: 438 DSPANSS-------------------GPVVVVDNLRAYLQIIDVSSILGLDYDISDHAFQ 560
+S ++SS GP VVVDNLRAYLQIIDV+SILGLDYDI+DHAF+
Sbjct: 117 ESSSSSSSSSSSSAAAAASSSSLASSGPAVVVDNLRAYLQIIDVASILGLDYDIADHAFE 176
Query: 561 LFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGE 740
LFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAAN+PQKEIGKYIKILGE
Sbjct: 177 LFRDCSSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGE 236
Query: 741 ALQLSQPINSNSIAVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI 920
ALQLSQPINSNSI+VHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI
Sbjct: 237 ALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAI 296
Query: 921 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTA 1100
YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTTA
Sbjct: 297 YLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTA 356
Query: 1101 ITSTRSSAPRADAVEIISSSDKDKQPEI--TKPSLVSETDNQVKSKMEVEVKGTTSVDQQ 1274
ITS RSSAPR D +EI+S D+DKQPE +KP+ ET +Q + K + E KG
Sbjct: 357 ITSGRSSAPRVDLIEIVSCLDRDKQPESKPSKPNETLETSHQARGKEDTECKGNCQGAHT 416
Query: 1275 V-LSRGKTA-DSQQQFRVPSFK--GEMNQSKSRGIDINKTQVGP-DSEGKVERDSS---- 1427
+ L+R T F F+ GE NQ S G+D+N+ P + E K++ +
Sbjct: 417 LGLNRPTTFWQLPNPFGGSGFRTSGEKNQIVSGGMDLNEGGANPQELEQKLDNGAKAATV 476
Query: 1428 ------------QRSSSNTWPF-HPQLTTSGSSHVQFVQ 1505
SS TWPF P + S SS+ Q +Q
Sbjct: 477 SVRAEQFPGAPPSSGSSITWPFRQPPSSGSSSSYAQLMQ 515
>gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora]
Length = 526
Score = 617 bits (1592), Expect = e-174
Identities = 342/526 (65%), Positives = 387/526 (73%), Gaps = 29/526 (5%)
Frame = +3
Query: 78 VRCPYCSGTQGRCTTTPLGRSITECCSCGRVVEERQTQTNDLFLLRAQDSPLCLVTSDLA 257
+RCPYCS QGRCTTT GRSITEC SCGRVVEERQ+Q++ LF +RAQDSPLCLVTSDL
Sbjct: 1 MRCPYCSAAQGRCTTTSSGRSITECTSCGRVVEERQSQSHHLFHIRAQDSPLCLVTSDLP 60
Query: 258 SIPSPSVVGLGPKNNEEDEDPFESTGFITTFSTWSLEPTPLFARSSLSFSGHLAELERCI 437
++P P+ P +N +D+DPFE TGFIT FSTWSLEP PLFA+SS+SF+GHLAELER +
Sbjct: 61 TLPVPATTDSNPTSNSDDDDPFEPTGFITAFSTWSLEPYPLFAQSSISFAGHLAELERVL 120
Query: 438 D-----------SPANSSGPVVVVDNLRAYLQIIDVSSILGLDYDISDHAFQLFRDCSSA 584
+ S +NSSGP VVVDNLRAYLQIIDV+SILGLDYDISDHAFQLFRDCSSA
Sbjct: 121 ETTSSSSSCSSSSGSNSSGPSVVVDNLRAYLQIIDVASILGLDYDISDHAFQLFRDCSSA 180
Query: 585 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI 764
TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI
Sbjct: 181 TCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPI 240
Query: 765 NSNSIAVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 944
NSNSI+VHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED
Sbjct: 241 NSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLED 300
Query: 945 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSTRSSA 1124
KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLP+NY+P VPPEKAFP I S RSS
Sbjct: 301 KRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYSPVVPPEKAFPMATIASGRSST 360
Query: 1125 PRADAVEIISSSDKDKQPEITKPSLVSETDNQVKSKMEVEVKGTTSVDQQ-------VLS 1283
PRAD VE + SSDK + + + S V +T + K+K E E + + Q +L
Sbjct: 361 PRADLVE-VPSSDKQTESKNPRTSDVLDTCHVAKNKEETENRDSIHRSQSLPMHRTPILW 419
Query: 1284 RGKTADSQQQFRVPSFKGEMNQSKSRGIDINKTQVGPDSEGKVERDS---------SQRS 1436
+ + P+ K N ++ ID ++Q G D KV S + +
Sbjct: 420 KSQPPVRSATVNTPADKIH-NITQEMDID-PRSQTGSDE--KVVASSMRPVLFSAPTSSA 475
Query: 1437 SSNTWPFHPQLTTSG--SSHVQFVQPPRFKESKADAYQNRSEDTPR 1568
S +WP Q T+SG S Q V P + D R + +
Sbjct: 476 GSLSWPL--QTTSSGFSPSGQQLVHPRNMASNGLDEMTPRQNENKK 519
>ref|XP_002867001.1| transcription factor IIB family protein [Arabidopsis lyrata subsp.
lyrata] gi|297312837|gb|EFH43260.1| transcription factor
IIB family protein [Arabidopsis lyrata subsp. lyrata]
Length = 506
Score = 595 bits (1533), Expect = e-167
Identities = 324/510 (63%), Positives = 374/510 (73%), Gaps = 13/510 (2%)
Frame = +3
Query: 78 VRCPYCSGTQGRCTTTPLGRSITECCSCGRVVEERQTQTNDLFLLRAQDSPLCLVTSDLA 257
++CPYCS TQGRC TT GRSITEC SCGRV+EERQTQ + LF LRAQD+PLCLVTSDL
Sbjct: 1 MKCPYCSSTQGRCATTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 258 SIPSPSVVGLGPKNNEEDEDPFESTGFITTFSTWSLEPTPLFARSSLSFSGHLAELERCI 437
+ PS+ E++EDPFE TGFIT FSTWSLEP+P+FARSSLSFSGHLAELER +
Sbjct: 61 TATQPSL--------EDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112
Query: 438 D---SPANSSGPVVVVDNLRAYLQIIDVSSILGLDYDISDHAFQLFRDCSSATCLRNRSV 608
+ S +NS+ VVVDNLRAY+QIIDV+SILGLD DIS+HAFQLFRDC SATCLRNRSV
Sbjct: 113 ELASSTSNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSV 172
Query: 609 EALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVH 788
EALATA LVQAIREAQEPRTLQEISIAAN+ QKEIGKYIKILGEALQLSQPINSNSI+VH
Sbjct: 173 EALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH 232
Query: 789 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 968
MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 233 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 292
Query: 969 CKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSTRSSAPRADAVEI 1148
CK+TGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTT I++TRS+ PRA
Sbjct: 293 CKITGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAADPPE 352
Query: 1149 ISSSDKDKQPEITKPSLVSETDNQVKSKMEVEVK-------GTTSV---DQQVLSRGKTA 1298
S D+DK P + T Q K K + + K GT SV + + K
Sbjct: 353 PSFVDRDK-PSVKPIETSDHTYQQPKGKEDKQPKFRQPWLFGTASVMNPGEMISEPAKPN 411
Query: 1299 DSQQQFRVPSFKGEMNQSKSRGIDINKTQVGPDSEGKVERDSSQRSSSNTWPFHPQLTTS 1478
+ + + + ++ ++ I + + P + S S+ W F P +
Sbjct: 412 NMDYEKQQLDKQQQLGDKETLPIYLRQHNQFPSNP-----SPSTGISTINWSFRPSGSPG 466
Query: 1479 GSSHVQFVQPPRFKESKADAYQNRSEDTPR 1568
SS++ V PP+ A+ + S+ R
Sbjct: 467 SSSNLPVVHPPKLPPGYAEIRGSGSQTGSR 496
>ref|NP_195383.1| transcription initiation factor TFIIB [Arabidopsis thaliana]
gi|2464915|emb|CAB16810.1| transcription initiation
factor like protein [Arabidopsis thaliana]
gi|7270613|emb|CAB80331.1| transcription initiation
factor like protein [Arabidopsis thaliana]
gi|16509378|emb|CAC82714.1| TFIIB-related protein
[Arabidopsis thaliana] gi|30102720|gb|AAP21278.1|
At4g37010 [Arabidopsis thaliana]
gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis
thaliana] gi|332661282|gb|AEE86682.1| transcription
initiation factor TFIIB [Arabidopsis thaliana]
Length = 503
Score = 592 bits (1527), Expect = e-167
Identities = 326/513 (63%), Positives = 375/513 (73%), Gaps = 17/513 (3%)
Frame = +3
Query: 78 VRCPYCSGTQGRCTTTPLGRSITECCSCGRVVEERQTQTNDLFLLRAQDSPLCLVTSDLA 257
++CPYCS QGRCTTT GRSITEC SCGRV+EERQTQ + LF LRAQD+PLCLVTSDL
Sbjct: 1 MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 258 SIPSPSVVGLGPKNNEEDEDPFESTGFITTFSTWSLEPTPLFARSSLSFSGHLAELERCI 437
+ PS E++EDPFE TGFIT FSTWSLEP+P+FARSSLSFSGHLAELER +
Sbjct: 61 TAAQPSP--------EDEEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTL 112
Query: 438 D---SPANSSGPVVVVDNLRAYLQIIDVSSILGLDYDISDHAFQLFRDCSSATCLRNRSV 608
+ S +NS+ VVVDNLRAY+QIIDV+SILGLD DIS+HAFQLFRDC SATCLRNRSV
Sbjct: 113 ELASSTSNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSV 172
Query: 609 EALATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVH 788
EALATA LVQAIREAQEPRTLQEISIAAN+ QKEIGKYIKILGEALQLSQPINSNSI+VH
Sbjct: 173 EALATACLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVH 232
Query: 789 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 968
MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI
Sbjct: 233 MPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 292
Query: 969 CKVTGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSTRSSAPRADAVEI 1148
CK+TGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPEKAFPTT I++TRS+ PRA
Sbjct: 293 CKITGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPE 352
Query: 1149 ISSSDKDKQPEITKPSLVSETDNQVKSKMEVEVK-------GTTSV--DQQVLS---RGK 1292
S +KDK P T Q K K + + K GT SV +++S +
Sbjct: 353 PSFVEKDK-PSAKPIETFDHTYQQPKGKEDKQPKFRQPWLFGTASVMNPAEMISEPAKPN 411
Query: 1293 TADSQQQFRVPSFKGEMNQSKSRGIDINKTQVGPDSEGKVERDSSQRSSSNTWPFHPQLT 1472
D ++Q + ++ ++ I + P + S S+ W F P +
Sbjct: 412 AMDYEKQQLDKQQQQQLGDKETLPIYLRDHNPFPSNP-----SPSTGISTINWSFRPSVV 466
Query: 1473 TSGSSHVQFVQPPRFKESKAD--AYQNRSEDTP 1565
SS++ + PP+ A+ +R+ D P
Sbjct: 467 PGSSSNLPVIHPPKLPPGYAEIRGSGSRNADNP 499
>ref|XP_003611972.1| Transcription initiation factor IIB [Medicago truncatula]
gi|358344389|ref|XP_003636272.1| Transcription initiation
factor IIB [Medicago truncatula]
gi|355502207|gb|AES83410.1| Transcription initiation
factor IIB [Medicago truncatula]
gi|355513307|gb|AES94930.1| Transcription initiation
factor IIB [Medicago truncatula]
gi|388496684|gb|AFK36408.1| unknown [Medicago truncatula]
Length = 487
Score = 592 bits (1526), Expect = e-166
Identities = 316/479 (65%), Positives = 367/479 (76%), Gaps = 1/479 (0%)
Frame = +3
Query: 78 VRCPYCSGTQGRCTTTPLGRSITECCSCGRVVEERQTQTNDLFLLRAQDSPLCLVTSDLA 257
++CPYCS QGRCTTT G+SITEC SCGRVVEERQ+ + +F LRAQD+PLCLVT DL
Sbjct: 1 MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDL- 59
Query: 258 SIPSPSVVGLGPKNNEEDEDPFESTGFITTFSTWSLEPTPLFARSSLSFSGHLAELERCI 437
P P++ NEE EDPFE TGFIT FSTWSLEP+PL+ +SSLSFSG+LAELER +
Sbjct: 60 --PPPTLNQTNTDTNEE-EDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTL 116
Query: 438 DSPANSSGPVVVVDNLRAYLQIIDVSSILGLDYDISDHAFQLFRDCSSATCLRNRSVEAL 617
+S + +S VVVDNLRAY+QIIDVSSILGL+ DISDHAFQLFRDC SATCLRNRSVEAL
Sbjct: 117 ESSSTNSSSSVVVDNLRAYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEAL 176
Query: 618 ATAALVQAIREAQEPRTLQEISIAANLPQKEIGKYIKILGEALQLSQPINSNSIAVHMPR 797
ATAALVQAIREAQEPRTLQEISIAAN+ QKEIGKYIKILGEALQLSQPINSNSI+VHMPR
Sbjct: 177 ATAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPR 236
Query: 798 FCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 977
FCTLLQLNKSAQELATHIG+VVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV
Sbjct: 237 FCTLLQLNKSAQELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKV 296
Query: 978 TGLTEVTLRKVYKELLENWDDLLPANYTPAVPPEKAFPTTAITSTRSSAPRADAVEIISS 1157
TGLTEVTLRKVYKELLENWDDLLP+NYTPAVPPE+AFPTT I S RSS + DA+E+ SS
Sbjct: 297 TGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKVDAIEVTSS 356
Query: 1158 SDKDKQPEITKPSLVSETDNQVKSKMEVEVKGTTSVDQQVLSRGKTADSQQQFRVPSFKG 1337
D + PE KP+ N+ + K +T++ Q + + + Q + P
Sbjct: 357 LDSENLPEF-KPNKA----NEAEGKSNARASQSTAIQQSTFWQSQLPSATQNHQNP---- 407
Query: 1338 EMNQSKSRGID-INKTQVGPDSEGKVERDSSQRSSSNTWPFHPQLTTSGSSHVQFVQPP 1511
N +S ID + + P+ +V ++ SS N+ + +S SS ++ + P
Sbjct: 408 --NVLESMDIDGLQRNHQQPEPMVEVANGAAIGSSVNSNQLYSPPASSSSSVMRSLSAP 464