BLASTX nr result
ID: Cimicifuga21_contig00022039
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00022039
(1048 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003533464.1| PREDICTED: transcription initiation factor T... 115 1e-40
ref|XP_003612586.1| Transcription initiation factor TFIID subuni... 100 4e-38
ref|XP_003560349.1| PREDICTED: transcription initiation factor T... 75 2e-23
sp|Q67W65.1|TAF1_ORYSJ RecName: Full=Transcription initiation fa... 74 6e-22
gb|EEE66112.1| hypothetical protein OsJ_22148 [Oryza sativa Japo... 74 6e-22
>ref|XP_003533464.1| PREDICTED: transcription initiation factor TFIID subunit 1-A-like
[Glycine max]
Length = 1910
Score = 115 bits (288), Expect(2) = 1e-40
Identities = 96/264 (36%), Positives = 128/264 (48%), Gaps = 17/264 (6%)
Frame = +3
Query: 306 KAKNKVVPEESKNSDKHAASR---IVISNKLNA-EVQVEQPKLIIK--PLAEVDRDQPRK 467
K ++P++ K D A SR IVI ++ QV+ K IK P E+DR+Q K
Sbjct: 1545 KVNKIIIPKKVKPDDTLAESRKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQSHK 1604
Query: 468 KIIIKQAKENTSVDQIKQESYSGLQKNYRKTKSMSELSSLEKYKKQ------EG-KPWGX 626
KI+IK+ KE ++ +GLQ +RKTK + ELS+ EK KKQ EG K W
Sbjct: 1605 KIVIKRTKEVIDLELDSPGGNTGLQ--HRKTKRIVELSNFEKQKKQETVYGTEGFKKWNS 1662
Query: 627 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----EQHLRRHEAVCK 794
E+ +RR +
Sbjct: 1663 KEDRRWREEQEKWRNDARLREEDRARRHHKEEIRMLKEQERLDEIKRFEEDIRRE----R 1718
Query: 795 EEQERQKVGEEKKKKAPEIVDDEYIEAQRSSRSDPCWLPGRARSAKRQSLVELGNYCEEY 974
EE+ERQK ++KKKK PE+ DEY++ R+ R D +P R RS KR+S+ ELG +Y
Sbjct: 1719 EEEERQKAKKKKKKKKPEL-RDEYLDDPRARRHDKR-MPERDRSGKRRSVTELGKIGADY 1776
Query: 975 SPQAKRRRAGPGEVGLANILESIV 1046
P KRRR G GEVGLANILES+V
Sbjct: 1777 MPPTKRRRGGGGEVGLANILESVV 1800
Score = 78.2 bits (191), Expect(2) = 1e-40
Identities = 43/94 (45%), Positives = 60/94 (63%), Gaps = 9/94 (9%)
Frame = +1
Query: 67 HQVIKDK-PVREGFLCGACGQMGHMKTNKNCPRYGEDREIQVQNTD----SGKLNFLNPP 231
+QV K+K P RE F+CGACG+ GHM+TNKNCP+YGED E Q+++ D SGK +F++P
Sbjct: 1418 NQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESADMEKSSGKSSFVDPS 1477
Query: 232 THLRR----KPSVKKLTPEVETSENSEKTRPKTK 321
+ + K S+ K +V +NS K K K
Sbjct: 1478 SLSQHKAPSKKSMSKSATKVAPVDNSTKIPLKFK 1511
>ref|XP_003612586.1| Transcription initiation factor TFIID subunit 1-A [Medicago
truncatula] gi|355513921|gb|AES95544.1| Transcription
initiation factor TFIID subunit 1-A [Medicago truncatula]
Length = 2196
Score = 100 bits (249), Expect(2) = 4e-38
Identities = 88/269 (32%), Positives = 123/269 (45%), Gaps = 22/269 (8%)
Frame = +3
Query: 306 KAKNKVVPEESKNSDKHAAS---RIVISNKLN-AEVQVEQPKLIIK--PLAEVDRDQPRK 467
K ++P + K+ D A S IVI + QV+ K IK P AE+DR++ K
Sbjct: 1822 KISKIIIPNKVKSDDTQAESLKHAIVIRPPTDPGRGQVDSHKFPIKIRPPAEIDRERSHK 1881
Query: 468 KIIIKQAKE-----------NTSVDQIKQESYSGLQ--KNYRKTKSMSELSSLEKYKKQE 608
KI+IK+ K+ NT + K + L + +RK ++M SL K +E
Sbjct: 1882 KIVIKRTKDVVDLELDSPGGNTGFEHRKTKRIVELANFEKHRKQETMYSTESLVKRNSKE 1941
Query: 609 GKPWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEQHLRRHEAV 788
+ W + LRR+E
Sbjct: 1942 DRRWWEEQEKRRNEARLREDKARRYRKEEMRMQEQERLNDLKMQEQERLDD--LRRYEED 1999
Query: 789 CK---EEQERQKVGEEKKKKAPEIVDDEYIEAQRSSRSDPCWLPGRARSAKRQSLVELGN 959
+ EE+ERQK ++KKK+ PE+ DEY++ R R L R RS KR+S+VELG
Sbjct: 2000 IRKEREEEERQKAKKKKKKRKPEL-RDEYLDDSRERRHGKRMLE-RERSGKRRSVVELGK 2057
Query: 960 YCEEYSPQAKRRRAGPGEVGLANILESIV 1046
+ E++ P KRRR G GEVGLANILESIV
Sbjct: 2058 FGEDFMPPTKRRRGGGGEVGLANILESIV 2086
Score = 85.1 bits (209), Expect(2) = 4e-38
Identities = 48/110 (43%), Positives = 70/110 (63%), Gaps = 9/110 (8%)
Frame = +1
Query: 19 LQITPWNLSSNFVACTHQVIKDK-PVREGFLCGACGQMGHMKTNKNCPRYGEDREIQVQN 195
++ITP + + + +QV K+K P RE F+CGACGQ+GHM+TNKNCP+YGED E Q+++
Sbjct: 1675 IKITPETILN--LCMKNQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDPEAQLES 1732
Query: 196 TD----SGKLNFLNPPT----HLRRKPSVKKLTPEVETSENSEKTRPKTK 321
TD +GK +F +P + L K S+ K+ ++ ENS K K K
Sbjct: 1733 TDMEKPTGKSSFGDPSSQSQHQLPSKKSISKIVTKLAPVENSTKIPLKFK 1782
>ref|XP_003560349.1| PREDICTED: transcription initiation factor TFIID subunit 1-like
[Brachypodium distachyon]
Length = 1830
Score = 74.7 bits (182), Expect(2) = 2e-23
Identities = 72/236 (30%), Positives = 113/236 (47%), Gaps = 8/236 (3%)
Frame = +3
Query: 363 SRIVISNKLNAE---VQVEQPKLIIKPLAEVDRDQPRKKIIIKQAKENTSVDQIKQESYS 533
S+I I +K+ +E + +P ++I+P AE ++D PRKK+IIKQ K + + + + S S
Sbjct: 1507 SKIKICSKVKSEDYPLDTPKPSVVIRPPAESEKDVPRKKVIIKQPKGHVDLQRALEISSS 1566
Query: 534 GLQKNYRKTKSMSELSSLEKYKKQEGKPWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 713
K RK ++ELSS EK +++ +
Sbjct: 1567 QEPKKIRK---IAELSSFEKKNREDDHLYA----GEPSQMNSSTDRLGLEGNRKNKEVLG 1619
Query: 714 XXXXXXXXXXXXXXAEQHL---RRHEAVCKEEQERQKVGEEKKKKAPEIVDDEYIEAQ-- 878
EQ L R +EA +EE ++ K + KKKK E DD+ ++ +
Sbjct: 1620 GDESWRAFKEQRERQEQRLIEARIYEANREEELQKAK-KKSKKKKKHEFRDDDVLDHRPY 1678
Query: 879 RSSRSDPCWLPGRARSAKRQSLVELGNYCEEYSPQAKRRRAGPGEVGLANILESIV 1046
R+ R +P R R+AKR++ ++ E++P AKRRR GEV L+NILE IV
Sbjct: 1679 RNERK----VPERDRTAKRRTPADM----TEFAPSAKRRRG--GEVELSNILEKIV 1724
Score = 61.6 bits (148), Expect(2) = 2e-23
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Frame = +1
Query: 97 EGFLCGACGQMGHMKTNKNCPRYGEDREIQVQNTDSGKLNFLNPPTHLRRKPSVKKL--- 267
+ +CGACGQ+GHM+TNK CPRYGED E + +++ L+ +H++ K K+L
Sbjct: 1395 DSLVCGACGQLGHMRTNKLCPRYGEDPE-------TLEMDALDVVSHVQAKTQGKRLVAK 1447
Query: 268 ----TPEVETSENSEKTRP 312
PE E E+ EK +P
Sbjct: 1448 VSSEVPETEGPESIEKIKP 1466
>sp|Q67W65.1|TAF1_ORYSJ RecName: Full=Transcription initiation factor TFIID subunit 1;
AltName: Full=TAFII250 gi|51535532|dbj|BAD37451.1|
putative HAC13 protein [Oryza sativa Japonica Group]
gi|51535630|dbj|BAD37604.1| putative HAC13 protein [Oryza
sativa Japonica Group]
Length = 1810
Score = 74.3 bits (181), Expect(2) = 6e-22
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 6/244 (2%)
Frame = +3
Query: 333 ESKNSDKHAASRIVISNKLNAE---VQVEQPKLIIKPLAEVDRDQPRKKIIIKQAKENTS 503
+SK++ K ++I ISNK+ + +P ++I+P AEV++D PRKKIIIKQ K
Sbjct: 1480 DSKSTGK--VNKIKISNKIKYDDYPPDTPKPSVVIRPPAEVEKDLPRKKIIIKQPKV-LG 1536
Query: 504 VDQIKQESYSGLQKNYRKTKSMSELSSLEKYKKQEGKPWGXXXXXXXXXXXXXXXXXXXX 683
Q E SG + RKT+ + ELSS EK +++ +
Sbjct: 1537 DQQRPTELRSGQEP--RKTRKIVELSSFEKRDREDDNGFS----GQPIQINSSHDRGWGL 1590
Query: 684 XXXXXXXXXXXXXXXXXXXXXXXXAEQHL---RRHEAVCKEEQERQKVGEEKKKKAPEIV 854
EQ L R ++A ++E ++ K + KKKK E
Sbjct: 1591 VGKRSKGIMESSESWRAFEEQRERQEQRLIEARIYDARREDELQKAK-KKNKKKKKHEFR 1649
Query: 855 DDEYIEAQRSSRSDPCWLPGRARSAKRQSLVELGNYCEEYSPQAKRRRAGPGEVGLANIL 1034
DD+ ++ R ++D +P R R+AKR++ ++ EY+P AKR R GEV L+NIL
Sbjct: 1650 DDDLLD-PRPYKNDR-RVPERGRAAKRRTPADM----TEYTPPAKRHRG--GEVELSNIL 1701
Query: 1035 ESIV 1046
E IV
Sbjct: 1702 EKIV 1705
Score = 57.0 bits (136), Expect(2) = 6e-22
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Frame = +1
Query: 106 LCGACGQMGHMKTNKNCPRYGEDREIQVQNTDSGKLNFLNPPTHLRRKPSVKKLTP---- 273
+CGACGQ+GHM+TNK CP+YGED E + +S + + + ++ + K S K+L
Sbjct: 1370 VCGACGQLGHMRTNKLCPKYGEDPETSEMDVNSIRSHPPDIVSNAQIKTSNKRLVAKVSS 1429
Query: 274 ---EVETSENSEKTRP 312
E E E+ EK +P
Sbjct: 1430 EAFETEGPESIEKAKP 1445
>gb|EEE66112.1| hypothetical protein OsJ_22148 [Oryza sativa Japonica Group]
Length = 1804
Score = 74.3 bits (181), Expect(2) = 6e-22
Identities = 77/244 (31%), Positives = 117/244 (47%), Gaps = 6/244 (2%)
Frame = +3
Query: 333 ESKNSDKHAASRIVISNKLNAE---VQVEQPKLIIKPLAEVDRDQPRKKIIIKQAKENTS 503
+SK++ K ++I ISNK+ + +P ++I+P AEV++D PRKKIIIKQ K
Sbjct: 1474 DSKSTGK--VNKIKISNKIKYDDYPPDTPKPSVVIRPPAEVEKDLPRKKIIIKQPKV-LG 1530
Query: 504 VDQIKQESYSGLQKNYRKTKSMSELSSLEKYKKQEGKPWGXXXXXXXXXXXXXXXXXXXX 683
Q E SG + RKT+ + ELSS EK +++ +
Sbjct: 1531 DQQRPTELRSGQEP--RKTRKIVELSSFEKRDREDDNGFS----GQPIQINSSHDRGWGL 1584
Query: 684 XXXXXXXXXXXXXXXXXXXXXXXXAEQHL---RRHEAVCKEEQERQKVGEEKKKKAPEIV 854
EQ L R ++A ++E ++ K + KKKK E
Sbjct: 1585 VGKRSKGIMESSESWRAFEEQRERQEQRLIEARIYDARREDELQKAK-KKNKKKKKHEFR 1643
Query: 855 DDEYIEAQRSSRSDPCWLPGRARSAKRQSLVELGNYCEEYSPQAKRRRAGPGEVGLANIL 1034
DD+ ++ R ++D +P R R+AKR++ ++ EY+P AKR R GEV L+NIL
Sbjct: 1644 DDDLLD-PRPYKNDR-RVPERGRAAKRRTPADM----TEYTPPAKRHRG--GEVELSNIL 1695
Query: 1035 ESIV 1046
E IV
Sbjct: 1696 EKIV 1699
Score = 57.0 bits (136), Expect(2) = 6e-22
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Frame = +1
Query: 106 LCGACGQMGHMKTNKNCPRYGEDREIQVQNTDSGKLNFLNPPTHLRRKPSVKKLTP---- 273
+CGACGQ+GHM+TNK CP+YGED E + +S + + + ++ + K S K+L
Sbjct: 1364 VCGACGQLGHMRTNKLCPKYGEDPETSEMDVNSIRSHPPDIVSNAQIKTSNKRLVAKVSS 1423
Query: 274 ---EVETSENSEKTRP 312
E E E+ EK +P
Sbjct: 1424 EAFETEGPESIEKAKP 1439