BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021468
         (436 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001173643.1| Os03g0752200 [Oryza sativa Japonica Group] g...    85   4e-16
ref|XP_003559449.1| PREDICTED: meiotic recombination protein SPO...    83   2e-14
ref|NP_147432.2| DNA topoisomerase VI subunit A [Aeropyrum perni...    73   6e-14
ref|YP_003815659.1| type II DNA topoisomerase VI subunit A [Acid...    75   6e-14
ref|XP_002412658.1| topoisomerase 6 subunit A, putative [Ixodes ...    71   6e-14

>ref|NP_001173643.1| Os03g0752200 [Oryza sativa Japonica Group]
           gi|31712057|gb|AAP68363.1| putative topoisomerase 6
           [Oryza sativa Japonica Group] gi|40539002|gb|AAR87259.1|
           putative DNA topoisomerase (with alternative splicing)
           [Oryza sativa Japonica Group]
           gi|53127614|emb|CAD71263.1| putative topoisomerase VI
           subunit A [Oryza sativa Indica Group]
           gi|108711121|gb|ABF98916.1| Phytochrome C, putative,
           expressed [Oryza sativa Japonica Group]
           gi|150371041|dbj|BAF65344.1| topoisomerase Spo11 [Oryza
           sativa Japonica Group] gi|218193764|gb|EEC76191.1|
           hypothetical protein OsI_13532 [Oryza sativa Indica
           Group] gi|222625809|gb|EEE59941.1| hypothetical protein
           OsJ_12593 [Oryza sativa Japonica Group]
           gi|255674904|dbj|BAH92371.1| Os03g0752200 [Oryza sativa
           Japonica Group] gi|269859219|gb|ACZ52153.1|
           topoisomerase 6 subunit A-like protein [Oryza sativa
           Japonica Group]
          Length = 381

 Score = 84.7 bits (208), Expect(2) = 4e-16
 Identities = 43/92 (46%), Positives = 58/92 (63%)
 Frame = +3

Query: 159 FTR*LKCDFWETYRYIMITGRGFPNANTSRFLRRMRVELNLPVFGLFDPNPHGFQIFKTY 338
           F R     F E  R I+ITGRG+P+  T RFLR +  +L+LPV+ L D +P+GF I  TY
Sbjct: 214 FQRLANDKFCERNRCIVITGRGYPDIPTRRFLRYLVEQLHLPVYCLVDADPYGFDILATY 273

Query: 339 RFGSLNTACNSLYLITPGITWLGMTYADIRDY 434
           +FGSL  A ++ +L  P I WLG+  +D  DY
Sbjct: 274 KFGSLQLAYDANFLRVPDIRWLGVFTSDFEDY 305



 Score = 24.6 bits (52), Expect(2) = 4e-16
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 101 LENIDGVALFILIVEKATQFYTLTQMRF 184
           ++++  VA +ILIVEK T F  L   +F
Sbjct: 195 IKDVVSVADYILIVEKETVFQRLANDKF 222


>ref|XP_003559449.1| PREDICTED: meiotic recombination protein SPO11-1-like [Brachypodium
           distachyon]
          Length = 383

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 41/92 (44%), Positives = 57/92 (61%)
 Frame = +3

Query: 159 FTR*LKCDFWETYRYIMITGRGFPNANTSRFLRRMRVELNLPVFGLFDPNPHGFQIFKTY 338
           F R     F E  R I+ITGRG+P+  T RFLR +  +L+LP + L D +P+GF I  TY
Sbjct: 216 FQRLANDKFCERNRCIVITGRGYPDVPTRRFLRHLVEQLHLPAYCLVDSDPYGFDILATY 275

Query: 339 RFGSLNTACNSLYLITPGITWLGMTYADIRDY 434
           +FGS+  A ++  L  PGI WLG+  +D  +Y
Sbjct: 276 KFGSMQLAYDANLLRVPGIRWLGVFTSDFEEY 307


>ref|NP_147432.2| DNA topoisomerase VI subunit A [Aeropyrum pernix K1]
           gi|150421694|sp|Q9YE67.2|TOP6A_AERPE RecName: Full=Type
           II DNA topoisomerase VI subunit A
           gi|116062483|dbj|BAA79679.2| type II DNA topoisomerase
           VI subunit A [Aeropyrum pernix K1]
          Length = 389

 Score = 73.2 bits (178), Expect(2) = 6e-14
 Identities = 33/87 (37%), Positives = 53/87 (60%)
 Frame = +3

Query: 174 KCDFWETYRYIMITGRGFPNANTSRFLRRMRVELNLPVFGLFDPNPHGFQIFKTYRFGSL 353
           +  FW+ Y+ +++TG G P+  T RF+RR+  EL LPV+ + D +P+G+ I+  Y+ GS+
Sbjct: 218 RAGFWKKYKALLVTGSGQPDRATRRFVRRLHEELKLPVYIITDSDPYGWYIYSVYKVGSI 277

Query: 354 NTACNSLYLITPGITWLGMTYADIRDY 434
             +  S  L TP   +LG+   DI  Y
Sbjct: 278 TLSYESERLATPKAKFLGVQMTDIFGY 304



 Score = 28.9 bits (63), Expect(2) = 6e-14
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 5   VSGPIRFNDNGNQINAS-LGIYDHRIPRTPGLMLENIDGVALFILIVEKATQFYTLTQMR 181
           V G +R    G+ I+ S LG   + I  TP L +E +D  A F+L+VEK   F  L +  
Sbjct: 162 VVGNMRIRSGGDVIDLSKLGHGAYAIEPTPDL-IEFLDVDAEFVLVVEKDAVFQQLHRAG 220

Query: 182 F 184
           F
Sbjct: 221 F 221


>ref|YP_003815659.1| type II DNA topoisomerase VI subunit A [Acidilobus saccharovorans
           345-15] gi|302328433|gb|ADL18628.1| Type II DNA
           topoisomerase VI subunit A [Acidilobus saccharovorans
           345-15]
          Length = 387

 Score = 74.7 bits (182), Expect(2) = 6e-14
 Identities = 34/84 (40%), Positives = 54/84 (64%)
 Frame = +3

Query: 183 FWETYRYIMITGRGFPNANTSRFLRRMRVELNLPVFGLFDPNPHGFQIFKTYRFGSLNTA 362
           FW+ Y+ I++TG G P+  T RF+RR+  EL LPV+ L D +P+G+ I+  ++ GS+  +
Sbjct: 220 FWQKYKSILVTGAGQPDRATRRFVRRLNEELGLPVYVLTDSDPYGWYIYSVFKVGSIQLS 279

Query: 363 CNSLYLITPGITWLGMTYADIRDY 434
             S  L TP   +LG++ +DI  Y
Sbjct: 280 YESERLATPKAKFLGVSMSDIFGY 303



 Score = 27.3 bits (59), Expect(2) = 6e-14
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 5   VSGPIRFNDNGNQINAS-LGIYDHRIPRTPGLMLENIDGVALFILIVEKATQFYTLTQMR 181
           V G +R     + I+ S LG   + I  TP L +E +D  A F+L+VEK   F  L ++ 
Sbjct: 161 VVGNMRIRSGNDIIDLSKLGHGAYAIESTPDL-IEFLDVDAEFVLVVEKDAVFQQLHRVG 219

Query: 182 F 184
           F
Sbjct: 220 F 220


>ref|XP_002412658.1| topoisomerase 6 subunit A, putative [Ixodes scapularis]
           gi|215506460|gb|EEC15954.1| topoisomerase 6 subunit A,
           putative [Ixodes scapularis]
          Length = 264

 Score = 70.9 bits (172), Expect(2) = 6e-14
 Identities = 31/74 (41%), Positives = 49/74 (66%)
 Frame = +3

Query: 204 IMITGRGFPNANTSRFLRRMRVELNLPVFGLFDPNPHGFQIFKTYRFGSLNTACNSLYLI 383
           I+ITG+G+P+ NT   LRR+ VE+++PV+ L D +P+G +I   Y +GSL  A  +  + 
Sbjct: 115 ILITGKGYPDVNTRELLRRLHVEVDIPVYALVDADPYGIEILCVYAYGSLAMANETDSMA 174

Query: 384 TPGITWLGMTYADI 425
            P I WLG+  +D+
Sbjct: 175 VPRIRWLGVHPSDV 188



 Score = 31.2 bits (69), Expect(2) = 6e-14
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 2   LVSGPIRFND-NGNQINASLGIYDHRIPRTPGLMLENIDGVALFILIVEKATQFYTLTQM 178
           L SG +RF D +GN ++ S       +P   G M  NI   A FIL++EK   F  L   
Sbjct: 49  LFSGDVRFTDGSGNFVDGSFK--PTLVPTDVGGM-RNIQSSATFILVIEKDATFQKLLND 105

Query: 179 RFL 187
            FL
Sbjct: 106 GFL 108