BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021275
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACS93786.1| RNA polymerase B [Clematis vitalba]                     61   1e-07
gb|ACS49335.1| RpoB [Helleborus atrorubens] gi|240253818|gb|ACS4...    60   2e-07
gb|ACS93868.1| RNA polymerase B [Ranunculus acris]                     59   5e-07
gb|ACS93801.1| RNA polymerase B [Ranunculus bulbosus]                  59   5e-07
gb|ACS93789.1| RNA polymerase B [Ranunculus repens]                    59   5e-07

>gb|ACS93786.1| RNA polymerase B [Clematis vitalba]
          Length = 139

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/48 (66%), Positives = 36/48 (75%), Gaps = 5/48 (10%)
 Frame = +2

Query: 206 RLFVGTG-----ALDLGVSAIAEHEGNVIYTDTYKIMLSGKGGSIIIP 334
           +  VGTG     ALD GVSAIAEHEG +IYTDT KIMLSG GG++ IP
Sbjct: 10  KCIVGTGLERQAALDSGVSAIAEHEGKIIYTDTDKIMLSGNGGTLRIP 57


>gb|ACS49335.1| RpoB [Helleborus atrorubens] gi|240253818|gb|ACS49336.1| RpoB
           [Helleborus croaticus]
          Length = 128

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 5/48 (10%)
 Frame = +2

Query: 206 RLFVGTG-----ALDLGVSAIAEHEGNVIYTDTYKIMLSGKGGSIIIP 334
           +  VGTG     ALD GVSAIAEHEG ++YTDT KIM+SG GG++ IP
Sbjct: 6   KCIVGTGLERQAALDSGVSAIAEHEGKIVYTDTDKIMVSGNGGTLSIP 53


>gb|ACS93868.1| RNA polymerase B [Ranunculus acris]
          Length = 136

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 5/48 (10%)
 Frame = +2

Query: 206 RLFVGTG-----ALDLGVSAIAEHEGNVIYTDTYKIMLSGKGGSIIIP 334
           +  VGTG     ALD GVSAIAEHEG +IYTDT KIMLSG G ++ IP
Sbjct: 10  KCIVGTGLERQVALDSGVSAIAEHEGKIIYTDTDKIMLSGNGDTLSIP 57


>gb|ACS93801.1| RNA polymerase B [Ranunculus bulbosus]
          Length = 136

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 5/48 (10%)
 Frame = +2

Query: 206 RLFVGTG-----ALDLGVSAIAEHEGNVIYTDTYKIMLSGKGGSIIIP 334
           +  VGTG     ALD GVSAIAEHEG +IYTDT KIMLSG G ++ IP
Sbjct: 10  KCIVGTGLERQVALDSGVSAIAEHEGKIIYTDTDKIMLSGNGDTLSIP 57


>gb|ACS93789.1| RNA polymerase B [Ranunculus repens]
          Length = 117

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 31/48 (64%), Positives = 35/48 (72%), Gaps = 5/48 (10%)
 Frame = +2

Query: 206 RLFVGTG-----ALDLGVSAIAEHEGNVIYTDTYKIMLSGKGGSIIIP 334
           +  VGTG     ALD GVSAIAEHEG +IYTDT KIMLSG G ++ IP
Sbjct: 11  KCIVGTGLERQVALDSGVSAIAEHEGKIIYTDTDKIMLSGNGDTLSIP 58