BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021191
         (1211 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   172   1e-40
ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   171   3e-40
ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   168   3e-39
ref|NP_567379.1| E3 ubiquitin-protein ligase [Arabidopsis thalia...   161   4e-37
ref|NP_172736.2| E3 ubiquitin-protein ligase [Arabidopsis thalia...   155   2e-35

>ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1
            [Vitis vinifera]
          Length = 372

 Score =  172 bits (437), Expect = 1e-40
 Identities = 121/365 (33%), Positives = 159/365 (43%), Gaps = 51/365 (13%)
 Frame = +1

Query: 43   NSERQRDDGFRF*IMETTRPSISRAHSTRDN---RSSPGRQSLPRAAGF--SAIHRMTMR 207
            ++ER  DD     I++ + P +  A   RD+   R S  RQSL  AA F   A  R  MR
Sbjct: 6    STERASDD-----IIDASTPLLGNAAEGRDDDRSRRSVRRQSLREAARFLRRASSRRMMR 60

Query: 208  QPQFLAVXXXXXXXXXXXXXXDPVYPTPFVFQELFWKPXXXXXXXXXXXXXXXEAPSMPL 387
            +P  L                D  Y  P V  ++ W                 E+PSMPL
Sbjct: 61   EPSMLV--RETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPL 118

Query: 388  RLWMVVQ-----MAFVCMPRPSHPLKTLASLFFQLRILL---------PHPENRSHIA-E 522
            R W+V       +  VC+       +  A +F      +         P  ++  ++   
Sbjct: 119  RFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQGDSSQYVTVA 178

Query: 523  KLLKCFRIMFPWMWWIKGFWVIWTGGPDLTRDSPQLYWXXXXXXXXXXXXXXXXXXXXXX 702
            K L+    MF ++WWI GF+ +  GG  L RDSPQLYW                      
Sbjct: 179  KHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVFFVVFCVALACV 238

Query: 703  XXXXXXXXXXXXXXGLYALAEQGGASKEDIDQLLQYEFRRTGP----------------- 831
                           LYA+A+Q GASKEDIDQL +++FR+ G                  
Sbjct: 239  IGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKVGDIEKIDGDIQGACGGIMT 298

Query: 832  --------------ETADCCICLSAYDDGAELRELPCGHHFDCACIDRLLYLNATCPVCK 969
                          E A+CCICLSAYDDG ELRELPCGHHF C C+D+ LY+NATCP+CK
Sbjct: 299  ECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDKWLYINATCPLCK 358

Query: 970  YNIVK 984
            YNI+K
Sbjct: 359  YNILK 363


>ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2
            [Vitis vinifera]
          Length = 383

 Score =  171 bits (434), Expect = 3e-40
 Identities = 123/376 (32%), Positives = 157/376 (41%), Gaps = 62/376 (16%)
 Frame = +1

Query: 43   NSERQRDDGFRF*IMETTRPSISRAHSTRDN---RSSPGRQSLPRAAGF--SAIHRMTMR 207
            ++ER  DD     I++ + P +  A   RD+   R S  RQSL  AA F   A  R  MR
Sbjct: 6    STERASDD-----IIDASTPLLGNAAEGRDDDRSRRSVRRQSLREAARFLRRASSRRMMR 60

Query: 208  QPQFLAVXXXXXXXXXXXXXXDPVYPTPFVFQELFWKPXXXXXXXXXXXXXXXEAPSMPL 387
            +P  L                D  Y  P V  ++ W                 E+PSMPL
Sbjct: 61   EPSMLV--RETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPL 118

Query: 388  RLWMVVQ-----MAFVCMPRPSHPLKTLASLF---------------------FQLRILL 489
            R W+V       +  VC+       +  A +F                      Q   L 
Sbjct: 119  RFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLA 178

Query: 490  PHPENRSHIAEKLLKCFRIMFPWMWWIKGFWVIWTGGPDLTRDSPQLYWXXXXXXXXXXX 669
               +  S    K L+    MF ++WWI GF+ +  GG  L RDSPQLYW           
Sbjct: 179  SLGDESSTSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLCIIFLGFDVF 238

Query: 670  XXXXXXXXXXXXXXXXXXXXXXXXXGLYALAEQGGASKEDIDQLLQYEFRRTGP------ 831
                                      LYA+A+Q GASKEDIDQL +++FR+ G       
Sbjct: 239  FVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRKVGDIEKIDG 298

Query: 832  -------------------------ETADCCICLSAYDDGAELRELPCGHHFDCACIDRL 936
                                     E A+CCICLSAYDDG ELRELPCGHHF C C+D+ 
Sbjct: 299  DIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHFHCTCVDKW 358

Query: 937  LYLNATCPVCKYNIVK 984
            LY+NATCP+CKYNI+K
Sbjct: 359  LYINATCPLCKYNILK 374


>ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 3
            [Vitis vinifera]
          Length = 392

 Score =  168 bits (425), Expect = 3e-39
 Identities = 124/385 (32%), Positives = 159/385 (41%), Gaps = 71/385 (18%)
 Frame = +1

Query: 43   NSERQRDDGFRF*IMETTRPSISRAHSTRDN---RSSPGRQSLPRAAGF--SAIHRMTMR 207
            ++ER  DD     I++ + P +  A   RD+   R S  RQSL  AA F   A  R  MR
Sbjct: 6    STERASDD-----IIDASTPLLGNAAEGRDDDRSRRSVRRQSLREAARFLRRASSRRMMR 60

Query: 208  QPQFLAVXXXXXXXXXXXXXXDPVYPTPFVFQELFWKPXXXXXXXXXXXXXXXEAPSMPL 387
            +P  L                D  Y  P V  ++ W                 E+PSMPL
Sbjct: 61   EPSMLV--RETAAEQLEERQSDWAYSKPVVVLDMIWNFAFVVVAAAVLVLSRRESPSMPL 118

Query: 388  RLWMVVQ-----MAFVCMPRPSHPLKTLASLF---------------------FQLRILL 489
            R W+V       +  VC+       +  A +F                      Q   L 
Sbjct: 119  RFWIVGYALQCILHIVCVSVEYRRRRRRAGVFGSEDDGIGSGGSYSSSPQGDSSQYVTLA 178

Query: 490  PHPENRSHIAE---------KLLKCFRIMFPWMWWIKGFWVIWTGGPDLTRDSPQLYWXX 642
               E+ S   +         K L+    MF ++WWI GF+ +  GG  L RDSPQLYW  
Sbjct: 179  NVDEHHSQTCQFLSLLSSVAKHLESANTMFSFIWWIIGFYWVSAGGQALARDSPQLYWLC 238

Query: 643  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYALAEQGGASKEDIDQLLQYEFRR 822
                                               LYA+A+Q GASKEDIDQL +++FR+
Sbjct: 239  IIFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASKEDIDQLSRFKFRK 298

Query: 823  TGP-------------------------------ETADCCICLSAYDDGAELRELPCGHH 909
             G                                E A+CCICLSAYDDG ELRELPCGHH
Sbjct: 299  VGDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHH 358

Query: 910  FDCACIDRLLYLNATCPVCKYNIVK 984
            F C C+D+ LY+NATCP+CKYNI+K
Sbjct: 359  FHCTCVDKWLYINATCPLCKYNILK 383


>ref|NP_567379.1| E3 ubiquitin-protein ligase [Arabidopsis thaliana]
            gi|75331789|sp|Q93Z92.1|RING4_ARATH RecName: Full=E3
            ubiquitin-protein ligase At4g11680; AltName: Full=RING
            finger protein At4g11680 gi|16323218|gb|AAL15343.1|
            AT4g11680/T5C23_110 [Arabidopsis thaliana]
            gi|38564282|gb|AAR23720.1| At4g11680/T5C23_110
            [Arabidopsis thaliana] gi|66865946|gb|AAY57607.1| RING
            finger family protein [Arabidopsis thaliana]
            gi|332657638|gb|AEE83038.1| E3 ubiquitin-protein ligase
            [Arabidopsis thaliana]
          Length = 390

 Score =  161 bits (407), Expect = 4e-37
 Identities = 119/366 (32%), Positives = 158/366 (43%), Gaps = 55/366 (15%)
 Frame = +1

Query: 52   RQRDDGFRF*IMETTR---PSISRAHSTRDNRSSP-----GRQSLPRAAGF--SAIHRMT 201
            R   DG    I++TT    P+++R  S  D  S+P      RQ L  AA F   A  R  
Sbjct: 26   RSNSDG----IIDTTPFLPPTVTRTISV-DEESNPIHRSARRQGLREAARFLRHAGSRRM 80

Query: 202  MRQPQFLAVXXXXXXXXXXXXXXDPVYPTPFVFQELFWKPXXXXXXXXXXXXXXXEAPSM 381
            MR+P  L                D  Y  P VF ++ W                 E P+M
Sbjct: 81   MREPSMLV--RETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNM 138

Query: 382  PLRLWMV-------VQMAFVCMP-----RPSHPL----KTLASLFFQLRILLPHPENRSH 513
            PLR+W+V       + MA VC+      R  HP       L +   Q  + L   E+R  
Sbjct: 139  PLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGGGSGLTNSSSQQYVSLAQLEDRGE 198

Query: 514  IAE--KLLKCFRIMFPWMWWIKGFWVIWTGGPDLTRDSPQLYWXXXXXXXXXXXXXXXXX 687
             +   K L+    MF ++WWI GF+ +  GG  L+ DSPQLYW                 
Sbjct: 199  TSNPAKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCV 258

Query: 688  XXXXXXXXXXXXXXXXXXXGLYALAEQGGASKEDIDQLLQYEFRRTG------------- 828
                                LYA+A+Q GASK DIDQ+ ++ F +TG             
Sbjct: 259  ALACVIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIM 318

Query: 829  --------------PETADCCICLSAYDDGAELRELPCGHHFDCACIDRLLYLNATCPVC 966
                          PE A+CCICL  Y+DG ELRELPC HHF C CID+ L++N+ CP+C
Sbjct: 319  TECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLC 378

Query: 967  KYNIVK 984
            K+NI+K
Sbjct: 379  KFNILK 384


>ref|NP_172736.2| E3 ubiquitin-protein ligase [Arabidopsis thaliana]
            gi|75335230|sp|Q9LN71.1|RING1_ARATH RecName: Full=E3
            ubiquitin-protein ligase At1g12760; AltName: Full=RING
            finger protein At1g12760
            gi|9502381|gb|AAF88088.1|AC025417_16 T12C24.29
            [Arabidopsis thaliana] gi|22531064|gb|AAM97036.1| unknown
            protein [Arabidopsis thaliana] gi|23198142|gb|AAN15598.1|
            unknown protein [Arabidopsis thaliana]
            gi|67037431|gb|AAY63561.1| RING domain protein
            [Arabidopsis thaliana] gi|332190803|gb|AEE28924.1| E3
            ubiquitin-protein ligase [Arabidopsis thaliana]
          Length = 408

 Score =  155 bits (392), Expect = 2e-35
 Identities = 110/363 (30%), Positives = 146/363 (40%), Gaps = 71/363 (19%)
 Frame = +1

Query: 136  RSSPGRQSLPRAAGF--SAIHRMTMRQPQFLAVXXXXXXXXXXXXXXDPVYPTPFVFQEL 309
            R S  RQ L  AA F   A     MR+P  L                D  Y  P V  ++
Sbjct: 48   RRSVRRQGLREAARFLSRASSGRVMREPSMLV--REAAAEQLEERQSDWAYSKPVVVLDI 105

Query: 310  FWKPXXXXXXXXXXXXXXXEAPSMPLRLWM-------VVQMAFVCM-------------- 426
             W                 E P MPLR+W+       V+ M  VC+              
Sbjct: 106  VWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTT 165

Query: 427  ----PRPSHPLKTLASLFFQLRIL------------LPHPENRSHIAEKLLKCFRIMFPW 558
                PR      + +S   +   L            L H +  S    K L+    MF +
Sbjct: 166  TTTPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSF 225

Query: 559  MWWIKGFWVIWTGGPDLTRDSPQLYWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 738
            +WWI GF+ +  GG +L ++SP++YW                                  
Sbjct: 226  IWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCI 285

Query: 739  XXGLYALAEQGGASKEDIDQLLQYEFRRTGP----------------------------- 831
               LYA+A+Q GASKEDI+QL +++FR+ G                              
Sbjct: 286  IAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHT 345

Query: 832  ---ETADCCICLSAYDDGAELRELPCGHHFDCACIDRLLYLNATCPVCKYNIVKRGYA*R 1002
               E A+CCICLSAY+DG ELRELPCGHHF C+C+D+ LY+NATCP+CKYNI+K     R
Sbjct: 346  LLQEDAECCICLSAYEDGTELRELPCGHHFHCSCVDKWLYINATCPLCKYNILKSSNLDR 405

Query: 1003 RSV 1011
              V
Sbjct: 406  EEV 408