BLASTX nr result

ID: Cimicifuga21_contig00021115 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021115
         (431 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|2...    64   2e-08
ref|XP_002512931.1| conserved hypothetical protein [Ricinus comm...    61   1e-07
ref|XP_003623407.1| F-box/kelch-repeat protein [Medicago truncat...    60   2e-07
ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|2...    58   7e-07
ref|XP_003605337.1| F-box protein [Medicago truncatula] gi|35550...    57   2e-06

>ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 38/100 (38%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
 Frame = +2

Query: 122 MPEDVGFQILLWLPVISLLRFKSVCKSCCALIENSTFVNQHLLHN---GNNTNLIVKDYD 292
           +P +V   ILL LPV SL+RF+S+ K  C+LI+   F+N HL H+    +N ++I+K++D
Sbjct: 4   IPHEVIHDILLQLPVKSLVRFRSLSKPICSLIDGPNFINLHLNHSITTKSNHSIILKEWD 63

Query: 293 QFVMLSGHKFDYTVPIDFH-WYPGNDVRIMNSINGIVCLR 409
            F +      D  V +  H  Y G    ++ S+NG+V LR
Sbjct: 64  LFAVDFDALSD-AVEVKHHPLYSGGGTEVIGSVNGLVFLR 102


>ref|XP_002512931.1| conserved hypothetical protein [Ricinus communis]
           gi|223547942|gb|EEF49434.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 386

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 20/116 (17%)
 Frame = +2

Query: 122 MPEDVGFQILLWLPVISLLRFKSVCKSCCALIENSTFVNQHLLHNGNNTN-------LIV 280
           +PED+  +ILL LP++ L+RF+ VCKS CAL+ +  F+ + LL NG + N       ++V
Sbjct: 5   LPEDLIIKILLRLPMLYLVRFRCVCKSWCALLSDPKFIYKKLLCNGEHQNYDNSPHPVVV 64

Query: 281 KDYDQ------FVMLSGHKFDYTVPIDFHWYPG------NDVRIM-NSINGIVCLR 409
           K  D       F +LS   F+ + P +   YP       +D+ I+ +S NG +CLR
Sbjct: 65  KRRDMSTRNYFFSVLSCETFEMSAPKEIP-YPKDIMENMSDISIVGSSSNGFICLR 119


>ref|XP_003623407.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355498422|gb|AES79625.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 373

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
 Frame = +2

Query: 128 EDVGFQILLWLPVISLLRFKSVCKSCCALIENSTFVNQHLLHNGNNTNLIVKDYD---QF 298
           ED+  +I L LP+ SLLRF+ + KS  +LI N TFV  H+  +  NTNL+ K +D    F
Sbjct: 9   EDIAIEIFLRLPLKSLLRFQCLSKSFESLISNPTFVKYHVQRSQKNTNLLFKFHDYYRSF 68

Query: 299 VMLSGHKFDYTV-PIDFHWYPGNDVRIMNSINGIVCL 406
            M++       V   DF     +  +++ S NG+VCL
Sbjct: 69  SMVNDKSLSTIVEDFDFGSRLKSKYKVVGSCNGLVCL 105


>ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1|
           predicted protein [Populus trichocarpa]
          Length = 419

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 4/101 (3%)
 Frame = +2

Query: 122 MPEDVGFQILLWLPVISLLRFKSVCKSCCALIENSTFVNQHLLHN---GNNTNLIVKDYD 292
           +P ++   I   LPV SLLRF+S+ K  C+LI+   F+  HL H+    +N ++I+K++D
Sbjct: 4   IPHEIITDIFQQLPVKSLLRFRSLSKPICSLIDGPDFIKFHLYHSITAKSNHSVILKEWD 63

Query: 293 QFVMLSGHKFDYTVPIDFH-WYPGNDVRIMNSINGIVCLRH 412
            F +      D  V +  H  Y      ++ S+NG+V LRH
Sbjct: 64  LFTVDFDTLSD-AVEVKHHPLYAAGGTEVIGSVNGLVFLRH 103


>ref|XP_003605337.1| F-box protein [Medicago truncatula] gi|355506392|gb|AES87534.1|
           F-box protein [Medicago truncatula]
          Length = 400

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 18/113 (15%)
 Frame = +2

Query: 122 MPEDVGFQILLWLPVISLLRFKSVCKSCCALIENSTFVN---QHLLHNG------NNTNL 274
           +P+D+ F IL  LP+ S  RF+  CK    L EN +F+N    +LL N       + T+L
Sbjct: 16  IPDDIAFSILSKLPLKSFKRFECFCKPWSLLSENRSFMNTFCNNLLFNSHRCPYYDGTSL 75

Query: 275 IVKDY----DQFVMLSGHKFDYTVPIDF-HWYPGNDVRI----MNSINGIVCL 406
           +++D+    D F  +SG +F+  V IDF + Y  N  +       SING  CL
Sbjct: 76  LLRDFKLGQDVFYSISGERFENKVKIDFPNSYDANRFKFRIFGFGSINGTFCL 128


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