BLASTX nr result

ID: Cimicifuga21_contig00021102 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00021102
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|2...   171   4e-41
emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]   171   6e-41
ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   169   3e-40
ref|XP_002525278.1| GTP binding protein, putative [Ricinus commu...   162   3e-38
dbj|BAB08465.1| unnamed protein product [Arabidopsis thaliana]        161   6e-38

>ref|XP_002310894.1| predicted protein [Populus trichocarpa] gi|222853797|gb|EEE91344.1|
           predicted protein [Populus trichocarpa]
          Length = 504

 Score =  171 bits (434), Expect = 4e-41
 Identities = 77/101 (76%), Positives = 90/101 (89%)
 Frame = -1

Query: 305 DCRIYPDMAVYHSISVTLGQAGLVKELVNVIECMRQKPSNKIKSMRSKDWDPRLEPDVVV 126
           D RIYPDMA YHSI+VTLGQ GL+KELV VIECMRQKPS +I  M +K+WDP LEPD+V+
Sbjct: 181 DRRIYPDMAAYHSIAVTLGQTGLLKELVKVIECMRQKPSKRINKMLNKNWDPVLEPDLVI 240

Query: 125 YNAVLNACVPTHQWKGVSWVMEEMRKSGLKPNGATYGLAME 3
           YNA+LNACVP+ QWKGVSWV +++R+SGLKPNGATYGLAME
Sbjct: 241 YNAILNACVPSQQWKGVSWVFQQLRRSGLKPNGATYGLAME 281


>emb|CAN83935.1| hypothetical protein VITISV_035769 [Vitis vinifera]
          Length = 490

 Score =  171 bits (433), Expect = 6e-41
 Identities = 76/102 (74%), Positives = 90/102 (88%)
 Frame = -1

Query: 308 GDCRIYPDMAVYHSISVTLGQAGLVKELVNVIECMRQKPSNKIKSMRSKDWDPRLEPDVV 129
           GDC IYPDMA YHS++VTLGQAGL+KEL+N+IECMRQKP  +IK+M  K+W+  LEPDVV
Sbjct: 263 GDCHIYPDMAAYHSVAVTLGQAGLLKELLNIIECMRQKPPKRIKNMCRKNWNALLEPDVV 322

Query: 128 VYNAVLNACVPTHQWKGVSWVMEEMRKSGLKPNGATYGLAME 3
           ++NAVLNACVPT QWKGVSWV +++RK  LKPNGATYGLAME
Sbjct: 323 IFNAVLNACVPTQQWKGVSWVFKQLRKCSLKPNGATYGLAME 364


>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509586|gb|AES90728.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  169 bits (427), Expect = 3e-40
 Identities = 77/102 (75%), Positives = 90/102 (88%)
 Frame = -1

Query: 308 GDCRIYPDMAVYHSISVTLGQAGLVKELVNVIECMRQKPSNKIKSMRSKDWDPRLEPDVV 129
           G+ R+YPDMA YHSI+VTLGQAGL+KEL+N++ECMRQKP   +K M  K+WDP LEPDVV
Sbjct: 289 GNIRVYPDMAAYHSIAVTLGQAGLLKELLNIVECMRQKPET-LKYMYRKNWDPTLEPDVV 347

Query: 128 VYNAVLNACVPTHQWKGVSWVMEEMRKSGLKPNGATYGLAME 3
           +YNAVLNACVP+ QWKGVSWV ++MRKS LKPNGATYGLAME
Sbjct: 348 IYNAVLNACVPSKQWKGVSWVFQQMRKSSLKPNGATYGLAME 389


>ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis]
           gi|223535436|gb|EEF37106.1| GTP binding protein,
           putative [Ricinus communis]
          Length = 1010

 Score =  162 bits (409), Expect = 3e-38
 Identities = 72/101 (71%), Positives = 86/101 (85%)
 Frame = -1

Query: 305 DCRIYPDMAVYHSISVTLGQAGLVKELVNVIECMRQKPSNKIKSMRSKDWDPRLEPDVVV 126
           D  +YPDMA YH I+VTLGQAG +KEL+ ++ECM+Q+PS +I  M  K WDP LEPD+V+
Sbjct: 414 DHNLYPDMAAYHVIAVTLGQAGNLKELLKIVECMKQQPSKRINKMCYKRWDPVLEPDIVI 473

Query: 125 YNAVLNACVPTHQWKGVSWVMEEMRKSGLKPNGATYGLAME 3
           YNAVLNACVPT QWKGV+WV E++RKSGLKPNGATYGLAME
Sbjct: 474 YNAVLNACVPTQQWKGVAWVFEQLRKSGLKPNGATYGLAME 514


>dbj|BAB08465.1| unnamed protein product [Arabidopsis thaliana]
          Length = 505

 Score =  161 bits (407), Expect = 6e-38
 Identities = 74/102 (72%), Positives = 88/102 (86%)
 Frame = -1

Query: 308 GDCRIYPDMAVYHSISVTLGQAGLVKELVNVIECMRQKPSNKIKSMRSKDWDPRLEPDVV 129
           GD ++YPDMA YH I+VTLGQAGL+KEL+ VIE MRQKP+   K++R K+WDP LEPD+V
Sbjct: 177 GDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLV 236

Query: 128 VYNAVLNACVPTHQWKGVSWVMEEMRKSGLKPNGATYGLAME 3
           VYNA+LNACVPT QWK VSWV  E+RK+GL+PNGATYGLAME
Sbjct: 237 VYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYGLAME 278


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