BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020996
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002884507.1| pentatricopeptide repeat-containing protein ...    79   5e-13
ref|NP_187185.2| pentatricopeptide repeat-containing protein [Ar...    78   7e-13
gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thal...    78   7e-13
ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat...    64   1e-08

>ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297330347|gb|EFH60766.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 676

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 45/91 (49%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
 Frame = +1

Query: 46  MKARWAIANFNSHLPSSTLSSFIRKKFKLSLNPLLDYHNSDFSLDHVDMSTLLSICGKEG 225
           M +RW I    SHLPS   +     K  +  +P   Y  S F L+HVDMS LLSICG+EG
Sbjct: 1   MNSRWVIQKLTSHLPSCFSTVLSPSKILIRQSP--SYQVSTFLLNHVDMSLLLSICGREG 58

Query: 226 YF-RLGASLHVSIVKNYEYFDPTFQPNSRNA 315
           +F  LG  LH SIVKN E+FDP      RNA
Sbjct: 59  WFPYLGPCLHASIVKNPEFFDPVDADIHRNA 89


>ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g05340 gi|332640702|gb|AEE74223.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = +1

Query: 46  MKARWAIANFNSHLPSSTLSSFIRKKFKLSLNPLLDYHNSDFSLDHVDMSTLLSICGKEG 225
           M +RW I    SHLPS   +     K  +  +P  +Y  S F L+HVDMS LLSICG+EG
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSP--NYQVSTFLLNHVDMSLLLSICGREG 58

Query: 226 YF-RLGASLHVSIVKNYEYFDPTFQPNSRNA 315
           +F  LG  LH SI+KN E+F+P      RNA
Sbjct: 59  WFPHLGPCLHASIIKNPEFFEPVDADIHRNA 89


>gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 43/91 (47%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = +1

Query: 46  MKARWAIANFNSHLPSSTLSSFIRKKFKLSLNPLLDYHNSDFSLDHVDMSTLLSICGKEG 225
           M +RW I    SHLPS   +     K  +  +P  +Y  S F L+HVDMS LLSICG+EG
Sbjct: 1   MNSRWVIQKLTSHLPSCLSTVLSPSKILIRQSP--NYQVSTFLLNHVDMSLLLSICGREG 58

Query: 226 YF-RLGASLHVSIVKNYEYFDPTFQPNSRNA 315
           +F  LG  LH SI+KN E+F+P      RNA
Sbjct: 59  WFPHLGPCLHASIIKNPEFFEPVDADIHRNA 89


>ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +1

Query: 46  MKARWAIANFNSHLPSSTLSSFIRKKFKLSLNPLLDYHNSDFSLDHVDMSTLLSICGKEG 225
           MK +W     NS LP  T       K  +  NP  +   S F+++ VD+S LLS+CG+EG
Sbjct: 1   MKPKWFFQKLNSFLPYCTSPVSSPLKTLILQNPYSE--TSKFAINQVDISFLLSLCGREG 58

Query: 226 YFRLGASLHVSIVKNYEYFDPTFQPNSRN 312
           Y  LG+SLH SI+KN+ + D   + N RN
Sbjct: 59  YLHLGSSLHASIIKNFGFLDGNNRDNLRN 87


>ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/77 (44%), Positives = 47/77 (61%)
 Frame = +1

Query: 46  MKARWAIANFNSHLPSSTLSSFIRKKFKLSLNPLLDYHNSDFSLDHVDMSTLLSICGKEG 225
           MK +W     +SHLPS   S     + +   NP  +  +S F L+H+D S LLSICG+EG
Sbjct: 1   MKLKWVFQKRSSHLPSWVTSLISPFRNQFHQNPFPET-SSTFVLNHLDPSFLLSICGREG 59

Query: 226 YFRLGASLHVSIVKNYE 276
              LG+SLH SI+K++E
Sbjct: 60  NLHLGSSLHASIIKSFE 76