BLASTX nr result

ID: Cimicifuga21_contig00020872 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020872
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320489.1| argonaute protein group [Populus trichocarpa...   194   6e-48
ref|XP_002527764.1| eukaryotic translation initiation factor 2c,...   188   4e-46
ref|XP_002279115.2| PREDICTED: protein argonaute 4A-like [Vitis ...   184   6e-45
gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana]                183   1e-44
gb|AFV15381.1| AGO4A [Solanum lycopersicum]                           182   3e-44

>ref|XP_002320489.1| argonaute protein group [Populus trichocarpa]
           gi|222861262|gb|EEE98804.1| argonaute protein group
           [Populus trichocarpa]
          Length = 869

 Score =  194 bits (493), Expect = 6e-48
 Identities = 103/151 (68%), Positives = 123/151 (81%), Gaps = 1/151 (0%)
 Frame = -3

Query: 455 GSGRSGRPINLIANHFRVSVNVPDAVFFQYSVSIMYGDNRPVEGKGIGRKVMDKLYQTYS 276
           G G SGR I+L+ NHF+VSVNVPDAVF+QY+VSI   DNR VE KGIGRK++D+LYQTYS
Sbjct: 6   GVGTSGRHISLLTNHFKVSVNVPDAVFYQYNVSITSEDNRAVESKGIGRKLIDRLYQTYS 65

Query: 275 SEMAGKQFAYDGEKALYTVGALPQNKFEFTVVLEEADAQRK-GSPDLIESPGETDRKRTK 99
           SE AGK+FAYDGEK+LYTVG LPQNK EFTVVLEE+ A+ + GSP   ESP     KR+K
Sbjct: 66  SEFAGKRFAYDGEKSLYTVGPLPQNKSEFTVVLEESFAKHESGSPGGGESP-PAAVKRSK 124

Query: 98  RSFQSKTFNVEISFAAKIPMRPIIHALKGLE 6
           RS++SKTF VE S+AAKIP++ I  ALKG+E
Sbjct: 125 RSYRSKTFKVETSYAAKIPLKSIALALKGIE 155


>ref|XP_002527764.1| eukaryotic translation initiation factor 2c, putative [Ricinus
           communis] gi|223532851|gb|EEF34625.1| eukaryotic
           translation initiation factor 2c, putative [Ricinus
           communis]
          Length = 921

 Score =  188 bits (477), Expect = 4e-46
 Identities = 93/154 (60%), Positives = 118/154 (76%), Gaps = 3/154 (1%)
 Frame = -3

Query: 455 GSGRSGRPINLIANHFRVSVNVPDAVFFQYSVSIMYGDNRPVEGKGIGRKVMDKLYQTYS 276
           G G  G+ I+L+ NHF+V+VN  D  FF Y VS+ Y D RPV+GKG+GRKV+D++++TY 
Sbjct: 61  GLGSKGQKISLLTNHFKVNVNKVDDYFFHYCVSLSYEDGRPVDGKGVGRKVIDRVHETYD 120

Query: 275 SEMAGKQFAYDGEKALYTVGALPQNKFEFTVVLEEADAQR---KGSPDLIESPGETDRKR 105
           SEM GK+FAYDGEK+L+TVGALP+NK EFTVVLE+  + R     SPD   SP E DRKR
Sbjct: 121 SEMGGKKFAYDGEKSLFTVGALPRNKLEFTVVLEDVTSNRNNGNASPDGHGSPNEGDRKR 180

Query: 104 TKRSFQSKTFNVEISFAAKIPMRPIIHALKGLEA 3
            +R +QSKTF VEISFAAKIPM+ I +AL+G E+
Sbjct: 181 MRRPYQSKTFKVEISFAAKIPMQAIANALRGQES 214


>ref|XP_002279115.2| PREDICTED: protein argonaute 4A-like [Vitis vinifera]
          Length = 866

 Score =  184 bits (467), Expect = 6e-45
 Identities = 88/151 (58%), Positives = 113/151 (74%)
 Frame = -3

Query: 455 GSGRSGRPINLIANHFRVSVNVPDAVFFQYSVSIMYGDNRPVEGKGIGRKVMDKLYQTYS 276
           G G  G+ I+L+ NHF+V +      FF YSV++ Y D RPVE KG+GRK+MDK+++TY 
Sbjct: 5   GFGSKGQKISLLTNHFKVGITNASGHFFHYSVALTYEDGRPVEMKGVGRKIMDKVHETYD 64

Query: 275 SEMAGKQFAYDGEKALYTVGALPQNKFEFTVVLEEADAQRKGSPDLIESPGETDRKRTKR 96
           +E++GK FAYDGEK+L+TVGALP NK EFTVVL+   + R GSPD+  SP   DRKR +R
Sbjct: 65  TELSGKDFAYDGEKSLFTVGALPHNKLEFTVVLDSVSSNRNGSPDVNGSPNGGDRKRPRR 124

Query: 95  SFQSKTFNVEISFAAKIPMRPIIHALKGLEA 3
           + QSKTF VEISFAAKIPM+ I  AL+G E+
Sbjct: 125 ASQSKTFKVEISFAAKIPMQAIASALRGQES 155


>gb|ABC61505.1| AGO4-2, partial [Nicotiana benthamiana]
          Length = 905

 Score =  183 bits (464), Expect = 1e-44
 Identities = 87/153 (56%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = -3

Query: 455 GSGRSGRPINLIANHFRVSVNVPDAVFFQYSVSIMYGDNRPVEGKGIGRKVMDKLYQTYS 276
           G G  G+ I ++ NHF+V+V   D  FF YSV++ Y D RPV+GKG+GRKV+D++++TY 
Sbjct: 47  GLGNKGQKIQILTNHFKVNVTNVDGHFFHYSVALFYEDGRPVDGKGVGRKVLDRVHETYD 106

Query: 275 SEMAGKQFAYDGEKALYTVGALPQNKFEFTVVLEEADAQR---KGSPDLIESPGETDRKR 105
           +E+AGK FAYDGEK+L+T+GALP+NK EFTVVLE+  + R     SP   E P E+DRKR
Sbjct: 107 TELAGKDFAYDGEKSLFTIGALPRNKMEFTVVLEDVTSNRNNGNSSPAADEGPNESDRKR 166

Query: 104 TKRSFQSKTFNVEISFAAKIPMRPIIHALKGLE 6
            +R +QSK+F VEISFAAKIPM+ I +AL+G E
Sbjct: 167 LRRPYQSKSFKVEISFAAKIPMQAIANALRGQE 199


>gb|AFV15381.1| AGO4A [Solanum lycopersicum]
          Length = 909

 Score =  182 bits (461), Expect = 3e-44
 Identities = 88/154 (57%), Positives = 116/154 (75%), Gaps = 3/154 (1%)
 Frame = -3

Query: 455 GSGRSGRPINLIANHFRVSVNVPDAVFFQYSVSIMYGDNRPVEGKGIGRKVMDKLYQTYS 276
           G G  G+ I ++ NHF+V+VN  D  FF YSV++ Y D RPV+GKG+GRKV+D +++TY 
Sbjct: 47  GVGNKGQKIQILTNHFKVNVNNVDGHFFHYSVALFYEDGRPVDGKGVGRKVLDTVHETYD 106

Query: 275 SEMAGKQFAYDGEKALYTVGALPQNKFEFTVVLEEADAQR---KGSPDLIESPGETDRKR 105
           +E+AGK FAYDGEK+L+T+GALP+NK EFTVVL++  + R     SP    SP E DRKR
Sbjct: 107 TELAGKDFAYDGEKSLFTIGALPRNKMEFTVVLDDVISNRNNGNSSPGGHGSPNEADRKR 166

Query: 104 TKRSFQSKTFNVEISFAAKIPMRPIIHALKGLEA 3
            +R +QSKTF VEISFAAKIPM+ I +AL+G E+
Sbjct: 167 LRRPYQSKTFKVEISFAAKIPMQAIANALRGQES 200


Top