BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020782
         (638 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl...    95   1e-17
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi...    90   3e-16
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab...    89   9e-16
ref|XP_002302374.1| predicted protein [Populus trichocarpa] gi|1...    87   3e-15
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c...    86   8e-15

>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
          Length = 108

 Score = 95.1 bits (235), Expect = 1e-17
 Identities = 47/82 (57%), Positives = 56/82 (68%), Gaps = 3/82 (3%)
 Frame = +2

Query: 41  MSISALFGTKVILKPISSHS---SSTTPKCGAPPAVIECSSRPQKKATAHHMKTRPKKTQ 211
           MSISA+FG  V  +  ++ S       P+ G   AVIECSSRPQKK T+HHMKTRP+KTQ
Sbjct: 1   MSISAIFGAAVPNRCSTAASFGARKAAPRLGGGAAVIECSSRPQKKGTSHHMKTRPRKTQ 60

Query: 212 PWDVKRRPTVYAXXXXXXXEWS 277
           PWD+KRRPTVYA       EW+
Sbjct: 61  PWDIKRRPTVYAPLPPLPPEWT 82


>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
           gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
           ribosomal protein 6, chloroplastic; AltName: Full=CL25;
           AltName: Full=Plastid-specific 50S ribosomal protein 6;
           Short=PSRP-6; Flags: Precursor
           gi|10177888|dbj|BAB11220.1| unnamed protein product
           [Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
           AT5g17870/MPI7_10 [Arabidopsis thaliana]
           gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
           [Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
           plastid-specific ribosomal protein 6 precursor
           (Psrp-6)-like [Arabidopsis thaliana]
           gi|332005097|gb|AED92480.1| plastid-specific 50S
           ribosomal protein 6 [Arabidopsis thaliana]
          Length = 106

 Score = 90.1 bits (222), Expect = 3e-16
 Identities = 47/83 (56%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
 Frame = +2

Query: 41  MSISALFGTKVILKPISSHSSS-TTPKCGAPPA---VIECSSRPQKKATAHHMKTRPKKT 208
           MS+SA+FGT ++    S        PK G       VIECSSRPQKK+TAHH KTRPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 209 QPWDVKRRPTVYAXXXXXXXEWS 277
           QPWD+KR+PTVYA       EWS
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWS 83


>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
           lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
           ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
          Length = 108

 Score = 88.6 bits (218), Expect = 9e-16
 Identities = 44/83 (53%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
 Frame = +2

Query: 41  MSISALFGTKVILKPIS----SHSSSTTPKCGAPPAVIECSSRPQKKATAHHMKTRPKKT 208
           MS+SA+FGT ++    S         T    G    VIECSSRPQKK+TAHH K+RPKKT
Sbjct: 1   MSVSAIFGTGIVTVAASPVLRQFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKSRPKKT 60

Query: 209 QPWDVKRRPTVYAXXXXXXXEWS 277
           QPWD+KR+PTVYA       EW+
Sbjct: 61  QPWDIKRKPTVYAPLPPLPAEWT 83


>ref|XP_002302374.1| predicted protein [Populus trichocarpa] gi|118486925|gb|ABK95296.1|
           unknown [Populus trichocarpa]
           gi|222844100|gb|EEE81647.1| predicted protein [Populus
           trichocarpa]
          Length = 123

 Score = 86.7 bits (213), Expect = 3e-15
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 12/91 (13%)
 Frame = +2

Query: 41  MSISALFGTKVILKPISSHSSSTTPKCGAPPAV------------IECSSRPQKKATAHH 184
           MS+S++FG+  +L P  S + S  P  G    V            IECSSRPQKKATAHH
Sbjct: 1   MSVSSIFGSPFLLAPKPSTTPSFKPVNGEFKTVPIGTGFGHGGMSIECSSRPQKKATAHH 60

Query: 185 MKTRPKKTQPWDVKRRPTVYAXXXXXXXEWS 277
            KTRP+K+QPWD+KR+PTVYA       +W+
Sbjct: 61  RKTRPRKSQPWDIKRKPTVYAPLPPLPPDWT 91


>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
           Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
           protein 6; Short=PSRP-6; Flags: Precursor
           gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
           ribosomal protein 6 precursor [Spinacia oleracea]
          Length = 116

 Score = 85.5 bits (210), Expect = 8e-15
 Identities = 44/90 (48%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
 Frame = +2

Query: 41  MSISALFGTKVILKPISSHSSS-----------TTPKCGAPPAVIECSSRPQKKATAHHM 187
           MS+SA+FG +V+  P    +SS           T   CG     IECSSRPQKK TAHHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 188 KTRPKKTQPWDVKRRPTVYAXXXXXXXEWS 277
           KTRPKKT  WD+KR P VY        EW+
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWT 90