BLASTX nr result

ID: Cimicifuga21_contig00020752 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020752
         (975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332355.1| predicted protein [Populus trichocarpa] gi|2...    64   5e-08
ref|XP_003570590.1| PREDICTED: SNW domain-containing protein 1-l...    62   2e-07
ref|NP_001237712.1| GAMYB-binding protein [Glycine max] gi|34512...    62   2e-07
ref|NP_001048184.1| Os02g0759800 [Oryza sativa Japonica Group] g...    61   5e-07
ref|XP_002454583.1| hypothetical protein SORBIDRAFT_04g033860 [S...    61   5e-07

>ref|XP_002332355.1| predicted protein [Populus trichocarpa] gi|222832076|gb|EEE70553.1|
           predicted protein [Populus trichocarpa]
          Length = 596

 Score = 63.9 bits (154), Expect = 5e-08
 Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 20/123 (16%)
 Frame = +3

Query: 147 SSESGDRLSSIAQSKSVPPYLKRICFFPRKPEDFGGGGAFPELISLPQYPLGMGLPSEDL 326
           SSE+    S+  +   VPPYL+R  F PRK EDFG GGAFPE I + QYPL MG      
Sbjct: 33  SSEAEQSASAAIKHNPVPPYLQRKGFVPRKVEDFGDGGAFPE-IHVAQYPLDMGRSKSAK 91

Query: 327 NRRQL-------RGIAAYDA----RDDVRKGV---------DFLRSKKRGRDLEVEDEEI 446
              ++        G  AYDA     ++ +K V           L+S++ G + E EDEE+
Sbjct: 92  PGSKILALTVDAHGNVAYDAIVKQNENAKKIVYSQHKDLIPKLLKSEEEGDEDEDEDEEL 151

Query: 447 RQK 455
           +++
Sbjct: 152 QKE 154


>ref|XP_003570590.1| PREDICTED: SNW domain-containing protein 1-like isoform 1
           [Brachypodium distachyon]
           gi|357138010|ref|XP_003570591.1| PREDICTED: SNW
           domain-containing protein 1-like isoform 2 [Brachypodium
           distachyon]
          Length = 610

 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 40/98 (40%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
 Frame = +3

Query: 108 STMNHRLKDPCSPSSESGDRLSSIAQ------SKSVPPYLKRICFFPRKPEDFGGGGAFP 269
           ST      DP       G+   + A       +K VPPY KR  F PR+PEDFG GGAFP
Sbjct: 16  STFYDHSSDPWFKERYGGEPADAAASGKPSGLAKPVPPYGKRTGFVPRRPEDFGDGGAFP 75

Query: 270 ELISLPQYPLGMGLPSEDLNRRQL------RGIAAYDA 365
           E++ + QYPLGMG   E    + L       G  A+DA
Sbjct: 76  EIL-VAQYPLGMGRRDEKGGSKILALTVDAHGSVAFDA 112


>ref|NP_001237712.1| GAMYB-binding protein [Glycine max] gi|345128628|gb|AAZ38969.2|
           GAMYB-binding protein [Glycine max]
          Length = 612

 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 33/60 (55%), Positives = 37/60 (61%)
 Frame = +3

Query: 129 KDPCSPSSESGDRLSSIAQSKSVPPYLKRICFFPRKPEDFGGGGAFPELISLPQYPLGMG 308
           K   S   E     ++ A+ K VPPYLKR  F PRK EDFG GGAFPE I + QYPL MG
Sbjct: 28  KQRFSSEEEEKSAAAAAAKQKPVPPYLKRAGFVPRKIEDFGDGGAFPE-IHVAQYPLDMG 86


>ref|NP_001048184.1| Os02g0759800 [Oryza sativa Japonica Group]
           gi|47497360|dbj|BAD19399.1| putative GAMYB-binding
           protein [Oryza sativa Japonica Group]
           gi|113537715|dbj|BAF10098.1| Os02g0759800 [Oryza sativa
           Japonica Group] gi|125541209|gb|EAY87604.1| hypothetical
           protein OsI_09015 [Oryza sativa Indica Group]
           gi|125583761|gb|EAZ24692.1| hypothetical protein
           OsJ_08462 [Oryza sativa Japonica Group]
          Length = 607

 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 35/66 (53%), Positives = 41/66 (62%), Gaps = 6/66 (9%)
 Frame = +3

Query: 186 SKSVPPYLKRICFFPRKPEDFGGGGAFPELISLPQYPLGMGLPSEDLNRRQL------RG 347
           +K VPPY KR  F PR+PEDFG GGAFPE I + QYPLGMG   E    + L      +G
Sbjct: 51  AKPVPPYGKRGGFVPRRPEDFGDGGAFPE-IHVAQYPLGMGRRDEKGGSKILALTVDAKG 109

Query: 348 IAAYDA 365
             A+DA
Sbjct: 110 SVAFDA 115


>ref|XP_002454583.1| hypothetical protein SORBIDRAFT_04g033860 [Sorghum bicolor]
           gi|241934414|gb|EES07559.1| hypothetical protein
           SORBIDRAFT_04g033860 [Sorghum bicolor]
          Length = 609

 Score = 60.8 bits (146), Expect = 5e-07
 Identities = 30/54 (55%), Positives = 37/54 (68%)
 Frame = +3

Query: 147 SSESGDRLSSIAQSKSVPPYLKRICFFPRKPEDFGGGGAFPELISLPQYPLGMG 308
           S+++       A ++ VPPY KR  F PR+PEDFG GGAFPE I + QYPLGMG
Sbjct: 35  SAQAAAAARPAAAARPVPPYGKRTGFVPRRPEDFGDGGAFPE-IHVAQYPLGMG 87


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