BLASTX nr result

ID: Cimicifuga21_contig00020727 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020727
         (230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311324.1| predicted protein [Populus trichocarpa] gi|2...    82   3e-14
ref|XP_002875200.1| hypothetical protein ARALYDRAFT_484241 [Arab...    69   5e-10
ref|NP_187787.1| uncharacterized protein [Arabidopsis thaliana] ...    67   1e-09
ref|NP_178432.1| uncharacterized protein [Arabidopsis thaliana] ...    65   4e-09
gb|AFG46681.1| Pinus taeda anonymous locus CL725Contig1_02 genom...    62   4e-08

>ref|XP_002311324.1| predicted protein [Populus trichocarpa] gi|222851144|gb|EEE88691.1|
           predicted protein [Populus trichocarpa]
          Length = 333

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 44/75 (58%), Positives = 53/75 (70%)
 Frame = +3

Query: 6   GIEYHGFEIDYSSVYFRVLYVIGEVVFGVGLLRLYVNWVLASVIVVVESSWGLEPLRRSV 185
           GI+  GFEI+ SS YF V  VI  VV    LL L + W+LA VIVV ESSWGLEPLRRS 
Sbjct: 158 GIQLPGFEINVSSPYFIVFLVILGVVLVFVLLHLQLKWILAQVIVVAESSWGLEPLRRSD 217

Query: 186 YLVKGMRGVVVCLLL 230
           YL+K M+GV + ++L
Sbjct: 218 YLMKRMKGVALSMVL 232


>ref|XP_002875200.1| hypothetical protein ARALYDRAFT_484241 [Arabidopsis lyrata subsp.
           lyrata] gi|297321038|gb|EFH51459.1| hypothetical protein
           ARALYDRAFT_484241 [Arabidopsis lyrata subsp. lyrata]
          Length = 344

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 32/64 (50%), Positives = 47/64 (73%)
 Frame = +3

Query: 36  YSSVYFRVLYVIGEVVFGVGLLRLYVNWVLASVIVVVESSWGLEPLRRSVYLVKGMRGVV 215
           YSS YF+   ++  ++     ++LYVNW+LA V+VVVES+WGL PL+RS  LVKGM+GV 
Sbjct: 175 YSSSYFQGFIIVVTIMSIAITIKLYVNWILAWVVVVVESAWGLTPLKRSNSLVKGMKGVS 234

Query: 216 VCLL 227
           + ++
Sbjct: 235 LSII 238


>ref|NP_187787.1| uncharacterized protein [Arabidopsis thaliana]
           gi|6671937|gb|AAF23197.1|AC016795_10 unknown protein
           [Arabidopsis thaliana] gi|332641580|gb|AEE75101.1|
           uncharacterized protein [Arabidopsis thaliana]
          Length = 348

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/62 (50%), Positives = 44/62 (70%)
 Frame = +3

Query: 21  GFEIDYSSVYFRVLYVIGEVVFGVGLLRLYVNWVLASVIVVVESSWGLEPLRRSVYLVKG 200
           G E DY+S YF+    +  ++     ++LYVNW+LA V+VVVES+WG+ PL+RS  LVKG
Sbjct: 174 GVEFDYASSYFQGFVTLVTIISIAIAVKLYVNWILAWVVVVVESAWGITPLKRSKRLVKG 233

Query: 201 MR 206
           M+
Sbjct: 234 MK 235


>ref|NP_178432.1| uncharacterized protein [Arabidopsis thaliana]
           gi|4335772|gb|AAD17449.1| unknown protein [Arabidopsis
           thaliana] gi|330250594|gb|AEC05688.1| uncharacterized
           protein [Arabidopsis thaliana]
          Length = 385

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +3

Query: 21  GFEIDYSSVYFRVLYVIGEVVFGVGLLRLYVNWVLASVIVVVESSWGLEPLRRSVYLVKG 200
           G E DY+S YF+    +  ++     ++LYVNW+LA V+VVVES+WG+ PL+ S  LVKG
Sbjct: 211 GVEFDYASSYFQGFVTLVTIISIAVAVKLYVNWILAWVVVVVESAWGITPLKTSKRLVKG 270

Query: 201 MR 206
           M+
Sbjct: 271 MK 272


>gb|AFG46681.1| Pinus taeda anonymous locus CL725Contig1_02 genomic sequence
           gi|383131715|gb|AFG46682.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131717|gb|AFG46683.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131719|gb|AFG46684.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131721|gb|AFG46685.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131723|gb|AFG46686.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131725|gb|AFG46687.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131727|gb|AFG46688.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131729|gb|AFG46689.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131733|gb|AFG46691.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131735|gb|AFG46692.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131737|gb|AFG46693.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131739|gb|AFG46694.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131741|gb|AFG46695.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131743|gb|AFG46696.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131745|gb|AFG46697.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
           gi|383131747|gb|AFG46698.1| Pinus taeda anonymous locus
           CL725Contig1_02 genomic sequence
          Length = 83

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
 Frame = +3

Query: 42  SVYFRVLYVIGEVVFG-VGLLRLY--VNWVLASVIVVVESSWGLEPLRRSVYLVKGMRGV 212
           +V+   +  + EV F  VGL+ +Y  ++WVLASVI V E SWGLEPLRRS YLVKGMR V
Sbjct: 15  NVHVASMIPVREVAFVFVGLVAMYLQIHWVLASVIPVAEGSWGLEPLRRSSYLVKGMRRV 74


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