BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020726
         (1170 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002324295.1| rna-dependent RNA polymerase [Populus tricho...   551   e-154
ref|XP_002308662.1| rna-dependent RNA polymerase [Populus tricho...   541   e-151
emb|CBI21038.3| unnamed protein product [Vitis vinifera]              535   e-150
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...   535   e-150
ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis ...   534   e-149

>ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1200

 Score =  551 bits (1420), Expect = e-154
 Identities = 260/382 (68%), Positives = 323/382 (84%), Gaps = 1/382 (0%)
 Frame = -1

Query: 1146 QQLKVIQQPAVNTPPNS-FFCIPSKDDISFEIIYLVNAVMHKGIINQYQLSDEFFELLRS 970
            ++++++ +P    P +  FFCI  K+ I+FE+++LVNAVMHKGI NQ+QLS++FF+LLR+
Sbjct: 304  RRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDLLRN 363

Query: 969  HSREVNIKALNHMYCYKRPVFDAYKRLKLVQEWLLKNPKVLKCSKVSDNNMEVHRLVITP 790
               EVN+ AL H+  Y+RPVF+AY+RLK VQEWLLKNP + K  K   + +E+ RLVITP
Sbjct: 364  QHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLVITP 423

Query: 789  TRAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGFQQLQSNVCSYYVAPIVRDITKNS 610
            T+AYCLPPEVELSNRVLRKYK+VADRFLRVTFMDEG Q++ SNV +YYVAPIVRDIT NS
Sbjct: 424  TKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNS 483

Query: 609  FPQKTAVFKRVKTILSDGFNLCGRKYSFLAFSANQLRDRSAWFFAEDMNIRSSDIQRWMG 430
            FPQKT +FKRV++IL++GF LCGR+YSFLAFSANQLRD+SAWFF+E+ NI   D++ WMG
Sbjct: 484  FPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMG 543

Query: 429  RFRDKNVAKCAARIGLCFSSTYATLEVPFKEVNSKLPDIERNGYVFSDGIGMLTPDLAMK 250
            +F ++N+AKCAAR+G CFSSTYAT+EVP +EVNS LPDIERNGYVFSDGIG++TPDLA +
Sbjct: 544  KFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDLARE 603

Query: 249  VAKKLQLGVNPPSAYQIRFAGYKGVITCWPQKDDSIRLSLRPSMDKFSSDHNILEVVSWT 70
            VA+KL+L ++PP AYQIR+AG KGV+ CWP K D +RLSLRPSM+KF S+H  LE+ SWT
Sbjct: 604  VAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWT 663

Query: 69   RFQPGFLNRQIITLLSALGVAD 4
            RFQPGFLNRQIITLLS L V D
Sbjct: 664  RFQPGFLNRQIITLLSTLNVPD 685


>ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1198

 Score =  541 bits (1393), Expect = e-151
 Identities = 262/391 (67%), Positives = 320/391 (81%), Gaps = 2/391 (0%)
 Frame = -1

Query: 1170 RRIQYSPCQQ-LKVIQQPAVNTP-PNSFFCIPSKDDISFEIIYLVNAVMHKGIINQYQLS 997
            RR+Q    ++ +++  +P    P  + FFCI  K+ I+F++++LVNAVMHKGI NQ+QLS
Sbjct: 292  RRVQEEYLRRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLS 351

Query: 996  DEFFELLRSHSREVNIKALNHMYCYKRPVFDAYKRLKLVQEWLLKNPKVLKCSKVSDNNM 817
            ++FF+LLR+   EVN+ AL H+Y Y+RPVFDAYK+LK+ QEWLLKNPK  K  K  D+  
Sbjct: 352  NDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIA 411

Query: 816  EVHRLVITPTRAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGFQQLQSNVCSYYVAP 637
            E+ RLVITPT+AYCLPPEVELSNRVLRKYK+VADRFLRVTFMDEG Q + SN  +Y+ AP
Sbjct: 412  EIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAP 471

Query: 636  IVRDITKNSFPQKTAVFKRVKTILSDGFNLCGRKYSFLAFSANQLRDRSAWFFAEDMNIR 457
            IVR IT  SFPQKT +FKRV++IL++GF LCGR+YSFLAFS+NQLRDRSAWFFAED NI 
Sbjct: 472  IVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNIN 531

Query: 456  SSDIQRWMGRFRDKNVAKCAARIGLCFSSTYATLEVPFKEVNSKLPDIERNGYVFSDGIG 277
               I+ WMG+F +KN+AKCAAR+G CFSSTYAT+EVP +EVNS LPDI+RNGY FSDGIG
Sbjct: 532  VMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIG 591

Query: 276  MLTPDLAMKVAKKLQLGVNPPSAYQIRFAGYKGVITCWPQKDDSIRLSLRPSMDKFSSDH 97
            M+TPDLA +VA+KL+   +PP AYQIR+AG KGV+ CWP++ D IRLSLR SM+KF S+H
Sbjct: 592  MITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNH 651

Query: 96   NILEVVSWTRFQPGFLNRQIITLLSALGVAD 4
             ILE+ SWTRFQPGFLNRQIITLLSAL V D
Sbjct: 652  TILEICSWTRFQPGFLNRQIITLLSALNVPD 682


>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score =  535 bits (1378), Expect = e-150
 Identities = 267/389 (68%), Positives = 317/389 (81%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1164 IQYSPCQQLKVIQQPAVNTPPNS-FFCIPSKDDISFEIIYLVNAVMHKGIINQYQLSDEF 988
            ++ SP  QL+V  +P    P +  FFCI  K+ I F +++LVNAVMHKGIINQ+QLSD+F
Sbjct: 135  LEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKF 194

Query: 987  FELLRSHSREVNIKALNHMYCYKRPVFDAYKRLKLVQEWLLKNPKVLKCSKVSDNNMEVH 808
            F+LLRS  +++NI AL H+  Y+ PVFDAY+RLKLV +WLLKNPK+LK  K  D+ +EV 
Sbjct: 195  FDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVR 254

Query: 807  RLVITPTRAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGFQQLQSNVCSYYVAPIVR 628
            RLVITP++AYCLPPEVELSNRVLR YKEV+DRFLRVTFMDEG Q + +NV +YYVAPIV+
Sbjct: 255  RLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVK 314

Query: 627  DITKNSFPQKTAVFKRVKTILSDGFNLCGRKYSFLAFSANQLRDRSAWFFAEDMNIRSSD 448
             IT NSFPQKT VFKRVKTIL+DGF LCGRKYSFLAFS+NQLRDRSAWFFAED       
Sbjct: 315  VITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRA 374

Query: 447  IQRWMGRFRDKNVAKCAARIGLCFSSTYATLEVPFKEVNSKLPDIERNGYVFSDGIGMLT 268
            I+ WMG+F ++NVAKCAAR+G CFSSTYAT+EVP  EV  +LPDI+RNGY FSDGIG + 
Sbjct: 375  IKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIV 433

Query: 267  PDLAMKVAKKLQLGVNPPSAYQIRFAGYKGVITCWPQKDDSIRLSLRPSMDKFSSDHNIL 88
            PDLAM+VA+KL+L    PSAYQIR+AG KGV+ CWP  +D IRLS RPSM+KF SDH IL
Sbjct: 434  PDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTIL 492

Query: 87   EVVSWTRFQPGFLNRQIITLLSALGVADE 1
            E+ SWTRFQPGFLNRQI+TLLSAL V D+
Sbjct: 493  EICSWTRFQPGFLNRQIVTLLSALNVPDK 521


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score =  535 bits (1378), Expect = e-150
 Identities = 267/389 (68%), Positives = 317/389 (81%), Gaps = 1/389 (0%)
 Frame = -1

Query: 1164 IQYSPCQQLKVIQQPAVNTPPNS-FFCIPSKDDISFEIIYLVNAVMHKGIINQYQLSDEF 988
            ++ SP  QL+V  +P    P +  FFCI  K+ I F +++LVNAVMHKGIINQ+QLSD+F
Sbjct: 297  LEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKF 356

Query: 987  FELLRSHSREVNIKALNHMYCYKRPVFDAYKRLKLVQEWLLKNPKVLKCSKVSDNNMEVH 808
            F+LLRS  +++NI AL H+  Y+ PVFDAY+RLKLV +WLLKNPK+LK  K  D+ +EV 
Sbjct: 357  FDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVR 416

Query: 807  RLVITPTRAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGFQQLQSNVCSYYVAPIVR 628
            RLVITP++AYCLPPEVELSNRVLR YKEV+DRFLRVTFMDEG Q + +NV +YYVAPIV+
Sbjct: 417  RLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVK 476

Query: 627  DITKNSFPQKTAVFKRVKTILSDGFNLCGRKYSFLAFSANQLRDRSAWFFAEDMNIRSSD 448
             IT NSFPQKT VFKRVKTIL+DGF LCGRKYSFLAFS+NQLRDRSAWFFAED       
Sbjct: 477  VITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRA 536

Query: 447  IQRWMGRFRDKNVAKCAARIGLCFSSTYATLEVPFKEVNSKLPDIERNGYVFSDGIGMLT 268
            I+ WMG+F ++NVAKCAAR+G CFSSTYAT+EVP  EV  +LPDI+RNGY FSDGIG + 
Sbjct: 537  IKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKRNGYDFSDGIGKIV 595

Query: 267  PDLAMKVAKKLQLGVNPPSAYQIRFAGYKGVITCWPQKDDSIRLSLRPSMDKFSSDHNIL 88
            PDLAM+VA+KL+L    PSAYQIR+AG KGV+ CWP  +D IRLS RPSM+KF SDH IL
Sbjct: 596  PDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTIL 654

Query: 87   EVVSWTRFQPGFLNRQIITLLSALGVADE 1
            E+ SWTRFQPGFLNRQI+TLLSAL V D+
Sbjct: 655  EICSWTRFQPGFLNRQIVTLLSALNVPDK 683


>ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
            gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase
            6 [Arabidopsis lyrata subsp. lyrata]
          Length = 1197

 Score =  534 bits (1375), Expect = e-149
 Identities = 263/391 (67%), Positives = 321/391 (82%), Gaps = 2/391 (0%)
 Frame = -1

Query: 1167 RIQYSPCQQLKVIQQPAVNTPPNS-FFCIPSKDDISFEIIYLVNAVMHKGIINQYQLSDE 991
            R+++ P    ++  +P    P +  FFCI  K+ ISFEI++LVN+V+H+G+ NQ+QL++ 
Sbjct: 296  RVRWPP----RIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTER 351

Query: 990  FFELLRSHSREVNIKALNHMYCYKRPVFDAYKRLKLVQEWLLKNPKVLKCSKVSDNNMEV 811
            FF+LLR+  ++VNI +L H+  YKRPVFDAYKRLKLVQEW+LKNPK+L   + S++  E+
Sbjct: 352  FFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRLKLVQEWILKNPKLLGGHEQSEDISEI 411

Query: 810  HRLVITPTRAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGFQQLQSNVCSYYVAPIV 631
             RLVITPTRAYCLPPEVELSNRVLRKY+ VA+RFLRVTFMDE  Q + SNV SY+VAPIV
Sbjct: 412  RRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYFVAPIV 471

Query: 630  RDITKNSFPQKTAVFKRVKTILSDGFNLCGRKYSFLAFSANQLRDRSAWFFAEDMNIRSS 451
            +D+T +SF QKT VFKRVK+IL+DGF LCGRKYSFLAFSANQLRD SAWFFAED   R S
Sbjct: 472  KDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDGKTRVS 531

Query: 450  DIQRWMGRFRDKNVAKCAARIGLCFSSTYATLEVPFKEVNSKLPDIERNGYVFSDGIGML 271
            DI+ WMG+F+DKNVAKCAAR+GLCFSSTYAT++V   EVN++LPDIERNGYVFSDGIG +
Sbjct: 532  DIKAWMGKFKDKNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIERNGYVFSDGIGTI 591

Query: 270  TPDLAMKVAKKLQLGVN-PPSAYQIRFAGYKGVITCWPQKDDSIRLSLRPSMDKFSSDHN 94
            TPDLA +V +KL+L ++  P AYQIR+AG+KGV+  WP K D IRL+LR SM KF+S H 
Sbjct: 592  TPDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRDSMKKFNSKHT 651

Query: 93   ILEVVSWTRFQPGFLNRQIITLLSALGVADE 1
            ILE+ SWTRFQPGFLNRQIITLLS LGV DE
Sbjct: 652  ILEICSWTRFQPGFLNRQIITLLSVLGVPDE 682